[Home] | [Total List]

[191168_at] G-protein coupled receptor

Description T11F9.1 /REP_DB=WormBase Gene ID /WP=CE06413 /TR=Q22405 /GB=CAA98536.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster 6grp_total > 60      4grp_total > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 3.4
(-2.8)
A 		2
(-3)
A 		5.5
(-2.4)
A 		35.7
(3)
A 		34
B 1.8
(-3)
A 		6.1
(2.9)
A 		6.2
(3)
A 		3.3
(-1)
A 		4
C 22.1
(0.5)
A 		14
(-1.1)
A 		4.2
(-3)
A 		34.6
(3)
A 		30
avr 9.1
(-1.8) 		7.4
(-2.3) 		5.3
(-3) 		24.5
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 7.7
(3)
A 		3.2
(-1.4)
A 		3.8
(-0.8)
A 		4.5
(-0.1)
A 		2.8
(-1.7)
A 		1.5
(-3)
A 		6
B 5.3
(-1.4)
A 		2.7
(-2.3)
A 		13
(1.3)
A 		18
(3)
A 		2.6
(-2.4)
A 		0.8
(-3)
A 		17
C 3.8
(3)
A 		3.4
(2)
A 		3.2
(1.6)
A 		3.5
(2.3)
A 		1.3
(-3)
A 		2
(-1.3)
A 		3
avr 5.6
(0.5) 		3.1
(-1.6) 		6.7
(1.4) 		8.7
(3) 		2.2
(-2.3) 		1.4
(-3) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.2
(-2)
A 		0.4
(-3)
A 		1.4
(-1.8)
A 		5.2
(3)
A 		5
B 0.6
(-3)
A 		1.5
(3)
A 		1.4
(2.3)
A 		0.7
(-2.3)
A 		1
C 7.3
(3)
A 		4
(-0.4)
A 		1.5
(-3)
A 		5.8
(1.4)
A 		6
avr 3
(0.8) 		2
(-1.6) 		1.4
(-3) 		3.9
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 1.4
(3)
A 		1.1
(1.2)
A 		0.8
(-0.6)
A 		1.1
(1.2)
A 		0.9
(0)
A 		0.4
(-3)
A 		1
B 1.8
(-1)
A 		0.9
(-2.2)
A 		3.2
(0.9)
A 		4.8
(3)
A 		1.1
(-1.9)
A 		0.3
(-3)
A 		5
C 1.4
(3)
A 		1
(0.6)
A 		0.8
(-0.6)
A 		0.7
(-1.2)
A 		0.4
(-3)
A 		0.7
(-1.2)
A 		1
avr 1.5
(0.5) 		1
(-1.2) 		1.6
(0.9) 		2.2
(3) 		0.8
(-1.9) 		0.5
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191168_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12801
Sequence Type Exemplar sequence
Representative Public ID T11F9.1 NCBI
Target Description T11F9.1 /REP_DB=WormBase Gene ID /WP=CE06413 /TR=Q22405 /GB=CAA98536.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073502(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073502 NCBI Caenorhabditis elegans T11F9.1 (T11F9.1) mRNA, complete cds. 11/11 None
SNAP00000013916 ENSEMBL cdna:SNAP chromosome:CEL140:V:11462729:11464135:1 11/11 None
GENEFINDER00000013937 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11462168:11469321:1 10/11 None
T11F9.1 ENSEMBL cdna:known chromosome:CEL140:V:11462168:11464430:1 gene:T11F9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11462167-11464430(+) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor
Ensembl T11F9.1
Entrez Gene 188419 Entrez gene
SwissProt Q22405 EMBL-EBI
WormBase CE06413 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98536 Hypothetical protein T11F9.1 [Caenorhabditis elegans] ref|NP_505903.1| T11F9.1 [Caenorhabditis elegans] 0.0
blast CAE75249 Hypothetical protein CBG23207 [Caenorhabditis briggsae] 0.0
blast CAD54157 Hypothetical protein T11F9.2a [Caenorhabditis elegans] ref|NP_505904.2| Temporarily Assigned Gene name family member (tag-140) [Caenorhabditis elegans] 0.0
blast CAA98527 Hypothetical protein T11F9.2b [Caenorhabditis elegans] ref|NP_872140.1| Temporarily Assigned Gene name family member (tag-140) [Caenorhabditis elegans] 0.0
blast CAE75250 Hypothetical protein CBG23208 [Caenorhabditis briggsae] 0.0
blast CAE75249 Hypothetical protein CBG23207 [Caenorhabditis briggsae] 1.0E-166
blast CAA98450 Hypothetical protein F32D8.10 [Caenorhabditis elegans] ref|NP_505783.1| F32D8.10 [Caenorhabditis elegans] 1.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR003689 EMBL-EBI Zinc transporter ZIP 1.7E-30
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505903.1 7 36-58,70-92,107-129,156-178,214-236,265-287,302-324
T11F9.1 7 36-58,70-92,107-129,156-178,214-236,265-287,302-324
SNAP00000013916 6 2-24,39-61,88-110,146-168,197-219,234-256
GENEFINDER00000013937 12 36-58,70-92,107-129,156-178,214-236,265-287,302-324,497-519,534-556,829-848,858-880,893-915
Sequence
Target Sequence 
>C. ELEGANS:191168_AT
ggaagtcggcagttcgaaatgcaacaagaacaatggtattcattgtattcacttatctac
tatcaaatgttctaaatgttatcattatcatctgggaatatattgatatggatatgttga
ctcaacaatttgaaactttctacatgttcgctgttgatgtcgtttcactttctacaatta
tttttggagcacttcgacttccaatttatgtaatttgtcaagccaatttgagaaaggaat
tttttgctcaattaaaaactatgctttcactcaacagttacacgggttttctttcttcat
ctaccaagaatatgactatcgaagatatggatattgatcgaaggactccagatataagtg
gagatggtaccgtcctgatcgttgaatccgatcagaaaaaggattcttcggcgacttgta
ccgtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAGTCGGCAGTTCGAAATGCAAC 699 531 770 Antisense
GGTATTCATTGTATTCACTTATCTA 649 505 804 Antisense
GAAACTTTCTACATGTTCGCTGTTG 702 355 901 Antisense
TGTTCGCTGTTGATGTCGTTTCACT 331 563 914 Antisense
GATGTCGTTTCACTTTCTACAATTA 129 409 925 Antisense
TATTTTTGGAGCACTTCGACTTCCA 409 661 948 Antisense
TAAAAACTATGCTTTCACTCAACAG 541 639 1022 Antisense
CACTCAACAGTTACACGGGTTTTCT 660 167 1037 Antisense
GGTTTTCTTTCTTCATCTACCAAGA 484 505 1054 Antisense
ATGGTACCGTCCTGATCGTTGAATC 353 51 1133 Antisense
GATTCTTCGGCGACTTGTACCGTGA 554 429 1171 Antisense
Sequence Source Affymetrix Proprietary Database