[Home] | [Total List]

[191167_at] conopressin receptor like

Description T07D10.2 /REP_DB=WormBase Gene ID /WP=CE13377 /TR=O02300 /GB=CAB04712.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=conopressin receptor like
Cluster 6grp_total > 46      4grp_total > 11      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 205
1 2 3 4 range
A 77.3
(-2.3)
A 		55.2
(-3)
A 		61
(-2.8)
A 		244.8
(3)
A 		190
B 68.9
(-1.8)
A 		89.1
(-1)
A 		40.1
(-3)
A 		189.8
(3)
A 		150
C 67.9
(-1.7)
A 		82.2
(-1)
A 		41.9
(-3)
A 		162.8
(3)
A 		121
avr 71.4
(-2.1) 		75.5
(-1.9) 		47.7
(-3) 		199.1
(3) 		151

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 56.5
(-1.5)
A 		98.5
(1.2)
A 		53.3
(-1.7)
A 		32.5
(-3)
A 		49.7
(-1.9)
A 		126.5
(3)
A 		94
B 50.3
(-1.2)
A 		78.6
(3)
A 		49.1
(-1.3)
A 		54.9
(-0.5)
A 		46.4
(-1.7)
A 		37.9
(-3)
A 		41
C 53.3
(-0.6)
A 		87.2
(2.9)
A 		74.8
(1.6)
A 		38.5
(-2.2)
A 		30.7
(-3)
A 		87.7
(3)
A 		57
avr 53.4
(-1.5) 		88.1
(3) 		59.1
(-0.8) 		42
(-3) 		42.3
(-3) 		84
(2.5) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 28.1
(1.1)
A 		12
(-3)
A 		15.9
(-2)
A 		35.8
(3)
A 		24
B 22
(-0.6)
A 		22
(-0.6)
A 		9.3
(-3)
A 		40.5
(3)
A 		31
C 22.5
(0.7)
A 		23.6
(1.2)
A 		14.6
(-3)
A 		27.4
(3)
A 		13
avr 24.2
(0.1) 		19.2
(-1.3) 		13.3
(-3) 		34.6
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 10.4
(-2.5)
A 		35
(3)
A 		11.6
(-2.2)
A 		8.2
(-3)
A 		15
(-1.5)
A 		30.8
(2.1)
A 		27
B 17.5
(-0.7)
A 		26.2
(3)
A 		11.9
(-3)
A 		14.5
(-1.9)
A 		18.8
(-0.1)
A 		14.1
(-2.1)
A 		14
C 19.8
(0.4)
A 		26.6
(2.3)
A 		19
(0.1)
A 		7.7
(-3)
A 		9.9
(-2.4)
A 		29.3
(3)
A 		22
avr 15.9
(-1.2) 		29.3
(3) 		14.2
(-1.7) 		10.1
(-3) 		14.6
(-1.6) 		24.7
(1.6) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191167_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.345
Sequence Type Exemplar sequence
Representative Public ID T07D10.2 NCBI
Target Description T07D10.2 /REP_DB=WormBase Gene ID /WP=CE13377 /TR=O02300 /GB=CAB04712.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=conopressin receptor like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060792(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060792 NCBI Caenorhabditis elegans T07D10.2 (T07D10.2) mRNA, complete cds. 11/11 None
GENEFINDER00000024109 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12629292:12631205:1 11/11 None
T07D10.2 ENSEMBL cdna:known chromosome:CEL140:I:12629292:12631205:1 gene:T07D10.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024089 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12629222-12631136(+) 100.0 100.0
Public Domain and Genome References
Gene Title conopressin receptor like
Ensembl T07D10.2
Entrez Gene 188227 Entrez gene
SwissProt O02300 EMBL-EBI
WormBase CE13377 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.3666.1.S1_AT arginine vasopressin receptor 2 (nephrogenic diabetes insipidus) cfa
CANINE_2:CFAAFFX.29657.1.S1_S_AT arginine vasopressin receptor 2 (nephrogenic diabetes insipidus) cfa
CHICKEN:GGAAFFX.5979.1.S1_AT arginine vasopressin receptor 2 (nephrogenic diabetes insipidus) gga
HG-U95AV2:667_AT arginine vasopressin receptor 2 (nephrogenic diabetes insipidus) hs
HC-G110:667_AT arginine vasopressin receptor 2 (nephrogenic diabetes insipidus) hs
HG-U133A:208111_AT arginine vasopressin receptor 2 (nephrogenic diabetes insipidus) hs
HG-U133_PLUS_2:208111_AT arginine vasopressin receptor 2 (nephrogenic diabetes insipidus) hs
HG-FOCUS:208111_AT arginine vasopressin receptor 2 (nephrogenic diabetes insipidus) hs
HG-U133A_2:208111_AT arginine vasopressin receptor 2 (nephrogenic diabetes insipidus) hs
HG-U133A:208108_S_AT arginine vasopressin receptor 2 (nephrogenic diabetes insipidus) hs
HG-U133_PLUS_2:208108_S_AT arginine vasopressin receptor 2 (nephrogenic diabetes insipidus) hs
HG-U133A_2:208108_S_AT arginine vasopressin receptor 2 (nephrogenic diabetes insipidus) hs
HUGENEFL:L22206_AT arginine vasopressin receptor 2 (nephrogenic diabetes insipidus) hs
U133_X3P:G2623239_3P_A_AT arginine vasopressin receptor 2 (nephrogenic diabetes insipidus) hs
HG-U133_PLUS_2:244603_AT Arginine vasopressin receptor 2 (nephrogenic diabetes insipidus) hs
HG-U133B:244603_AT Arginine vasopressin receptor 2 (nephrogenic diabetes insipidus) hs
HG-U95D:71755_AT Arginine vasopressin receptor 2 (nephrogenic diabetes insipidus) hs
U133_X3P:HS.220576.0.A1_3P_AT Arginine vasopressin receptor 2 (nephrogenic diabetes insipidus) hs
MOUSE430_2:1450277_AT arginine vasopressin receptor 2 mm
MOE430A:1450277_AT arginine vasopressin receptor 2 mm
MOUSE430A_2:1450277_AT arginine vasopressin receptor 2 mm
MG-U74AV2:96585_AT arginine vasopressin receptor 2 mm
RAE230A:1369873_AT arginine vasopressin receptor 2 rn
RAT230_2:1369873_AT arginine vasopressin receptor 2 rn
RAT230_2:1371265_AT arginine vasopressin receptor 2 rn
RAE230A:1371265_AT arginine vasopressin receptor 2 rn
RN-U34:Z11932CDS_AT arginine vasopressin receptor 2 rn
RG-U34A:Z11932CDS_AT arginine vasopressin receptor 2 rn
RN-U34:Z11932CDS_G_AT arginine vasopressin receptor 2 rn
RG-U34A:Z11932CDS_G_AT arginine vasopressin receptor 2 rn
RG-U34A:X83264EXON_AT arginine vasopressin receptor 2 rn
RAE230B:1393958_AT Arginine vasopressin receptor 2 rn
RAT230_2:1393958_AT Arginine vasopressin receptor 2 rn
RG-U34C:RC_AA819795_AT Arginine vasopressin receptor 2 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04712 Hypothetical protein T07D10.2 [Caenorhabditis elegans] ref|NP_493193.1| T07D10.2 [Caenorhabditis elegans] 0.0
blast CAE64101 Hypothetical protein CBG08710 [Caenorhabditis briggsae] 1.0E-180
blast CAE63281 Hypothetical protein CBG07660 [Caenorhabditis briggsae] 4.0E-77
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 1.9E-41
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493193.1 7 48-70,96-118,128-146,167-189,209-231,289-311,321-343
T07D10.2 7 48-70,96-118,128-146,167-189,209-231,289-311,321-343
GENEFINDER00000024109 7 48-70,96-118,128-146,167-189,209-231,289-311,321-343
Sequence
Target Sequence 
>C. ELEGANS:191167_AT
ataccagctctacgtttgcttgttcaactcagtggtatggcttctgccgagtgccatcgc
tggatggctctacttatgcgtgtgtaaagcggtgtggaagagcacctcgttcagcagctc
actgaggaataatatgaagaagatggaacatatgaagctgaccgaaaagaacggcggcat
gcaggctcaccacaaaggagccacgatgcagtgcgtcgagttggatcgaaggagagttca
gaccgtgaagctcacgttgacaattgtcgccgcgaactttgtgctctgggctccgttttg
catcacttcggtgattgatgccgtgtggccaacggcgataaactccacattcgccacata
catcatgttcttcggcaacctgaacagctgcatgaacccctggctatggttccatttcaa
ccggaaacaattgaaacgcgcatgcccgtgccgaaaatcctcggaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATACCAGCTCTACGTTTGCTTGTTC 686 21 627 Antisense
AACTCAGTGGTATGGCTTCTGCCGA 434 135 652 Antisense
CATCGCTGGATGGCTCTACTTATGC 332 211 681 Antisense
CACCTCGTTCAGCAGCTCACTGAGG 599 201 729 Antisense
GCCACGATGCAGTGCGTCGAGTTGG 229 279 826 Antisense
AATTGTCGCCGCGAACTTTGTGCTC 110 179 888 Antisense
GGCCAACGGCGATAAACTCCACATT 574 541 953 Antisense
CATACATCATGTTCTTCGGCAACCT 70 213 983 Antisense
CAACCTGAACAGCTGCATGAACCCC 508 187 1002 Antisense
GAACCCCTGGCTATGGTTCCATTTC 169 1 1020 Antisense
TGCCCGTGCCGAAAATCCTCGGAAC 686 583 1069 Antisense
Sequence Source Affymetrix Proprietary Database