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[191166_at] 7TM chemoreceptor, str family

Description C42D4.4 /REP_DB=WormBase Gene ID /WP=CE24841 /GEN=str-44 /TR=Q18571 /GB=AAA83346.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 93      4grp_total > 02      6grp_cgc > 99      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 240
1 2 3 4 range
A 16.5
(-2.6)
A 		1.5
(-3)
A 		2.6
(-3)
A 		241.4
(3)
P 		240
B 3.1
(-3)
A 		6.8
(-2.9)
A 		3.9
(-3)
A 		233.8
(3)
P 		231
C 3.5
(-2.9)
A 		23
(-2.4)
A 		1
(-3)
A 		212.8
(3)
P 		212
avr 7.7
(-2.9) 		10.4
(-2.8) 		2.5
(-3) 		229.3
(3) 		227

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 7.5
(-3)
A 		28.8
(1.3)
A 		8.4
(-2.8)
A 		26.1
(0.8)
A 		37
(3)
A 		16.8
(-1.1)
A 		30
B 22.5
(-0.3)
A 		28.9
(0.6)
A 		17
(-1.1)
A 		3.3
(-3)
A 		41.8
(2.5)
A 		45.5
(3)
A 		42
C 9.2
(-2.3)
A 		16.4
(-0.7)
A 		25.4
(1.3)
A 		22.2
(0.6)
A 		32.9
(3)
A 		6.1
(-3)
A 		27
avr 13.1
(-3) 		24.7
(-0.1) 		16.9
(-2.1) 		17.2
(-2) 		37.2
(3) 		22.8
(-0.6) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 6
(-2)
A 		0.3
(-3)
A 		0.7
(-2.9)
A 		35.3
(3)
P 		35
B 1
(-3)
A 		1.7
(-2.9)
A 		0.9
(-3)
A 		49.8
(3)
P 		49
C 1.1
(-2.9)
A 		6.6
(-2)
A 		0.4
(-3)
A 		35.9
(3)
P 		36
avr 2.7
(-2.7) 		2.9
(-2.7) 		0.7
(-3) 		40.3
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 1.4
(-3)
A 		10.2
(2.4)
A 		1.8
(-2.8)
A 		6.6
(0.2)
A 		11.2
(3)
A 		4.1
(-1.3)
A 		10
B 7.8
(-0.4)
A 		9.6
(0.2)
A 		4.1
(-1.8)
A 		0.9
(-3)
A 		17
(3)
A 		17
(3)
A 		16
C 3.4
(-2)
A 		5
(-0.9)
A 		6.5
(0.1)
A 		4.5
(-1.3)
A 		10.6
(3)
A 		2
(-3)
A 		9
avr 4.2
(-2.9) 		8.3
(-0.1) 		4.1
(-2.9) 		4
(-3) 		12.9
(3) 		7.7
(-0.5) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191166_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9626
Sequence Type Exemplar sequence
Representative Public ID C42D4.4 NCBI
Target Description C42D4.4 /REP_DB=WormBase Gene ID /WP=CE24841 /GEN=str-44 /TR=Q18571 /GB=AAA83346.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068730(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068730 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-44) (str-44) mRNA, complete cds. 11/11 None
SNAP00000029583 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7177170:7178406:1 11/11 None
GENEFINDER00000029597 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7173772:7178406:1 11/11 None
C42D4.4 ENSEMBL cdna:known chromosome:CEL140:IV:7177170:7178406:1 gene:C42D4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7177175-7178412(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-44
Ensembl C42D4.4
Entrez Gene 191978 Entrez gene
SwissProt Q18571 EMBL-EBI
WormBase CE24841 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_501131 Seven TM Receptor family member (str-44) [Caenorhabditis elegans] gb|AAA83346.2| Seven tm receptor protein 44 [Caenorhabditis elegans] 0.0
blast NP_501130 Seven TM Receptor family member (str-1) [Caenorhabditis elegans] gb|AAA83345.3| Seven tm receptor protein 1 [Caenorhabditis elegans] 1.0E-168
blast NP_501131 Seven TM Receptor family member (str-44) [Caenorhabditis elegans] gb|AAA83346.2| Seven tm receptor protein 44 [Caenorhabditis elegans] 1.0E-138
blast CAE61826 Hypothetical protein CBG05796 [Caenorhabditis briggsae] 1.0E-126
blast CAB04821 Hypothetical protein T23D5.9 [Caenorhabditis elegans] ref|NP_506923.1| Seven TM Receptor family member (str-43) [Caenorhabditis elegans] 1.0E-126
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.2E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501131.1 7 10-32,39-61,91-113,133-155,198-220,247-269,284-306
C42D4.4 7 10-32,39-61,91-113,133-155,198-220,247-269,284-306
SNAP00000029583 7 10-32,39-61,91-113,133-155,198-220,247-269,284-306
GENEFINDER00000029597 13 10-32,45-67,89-111,132-154,196-218,249-271,281-303,350-372,579-601,621-643,686-708,735-757,772-794
Sequence
Target Sequence 
>C. ELEGANS:191166_AT
ctctattcactcatttctgggtttatatatggaggtgcattaggctatttcggatatcct
gatatctattcagatgattacatgagtgacgtagttgaagaatggtacaaccgcacaata
accagcttcccgcgttttcttataattccttacgcagcagatggttctgtgagatggcag
aatattgattttttgatcgttggagtttttattttggaattacaatatgccataattatt
tattgtggtgttcgaatgcatacaattcttcaaaaagaacttcaacaacaatcaattgtc
aaccaaaaacttcaaaaacaattcttcagagctcttgtagtacaaaccgttgttccaaca
ttcttgttcgtgcttccaatagctccatttttaattggtccgttacttgaaccaattatt
gaaatcggaatgaactttccaactggatggatgtatgttatattgactatctattcacct
attgatacaatcgcatttatgatgattgttcaagaatacaaaaaagctttgagagaagtt
tttcatccaattcttcctaagagagtcaaggtaatgagcgaacttactatgccaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTATTCACTCATTTCTGGGTTTA 225 229 421 Antisense
GGAGGTGCATTAGGCTATTTCGGAT 139 517 451 Antisense
TACAACCGCACAATAACCAGCTTCC 685 641 526 Antisense
AATTCCTTACGCAGCAGATGGTTCT 466 177 564 Antisense
GTTGTTCCAACATTCTTGTTCGTGC 110 439 769 Antisense
TTGTTCGTGCTTCCAATAGCTCCAT 144 705 784 Antisense
ATAGCTCCATTTTTAATTGGTCCGT 171 23 799 Antisense
GGTCCGTTACTTGAACCAATTATTG 18 1 817 Antisense
ATTGACTATCTATTCACCTATTGAT 385 5 882 Antisense
GTTTTTCATCCAATTCTTCCTAAGA 337 449 958 Antisense
TAATGAGCGAACTTACTATGCCAAC 600 635 992 Antisense
Sequence Source Affymetrix Proprietary Database