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[191164_at] 7TM receptor, srx family

Description K06B4.9 /REP_DB=WormBase Gene ID /WP=CE11798 /TR=O45662 /GB=CAB05757.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster 6grp_total > 81      4grp_total > 03      6grp_cgc > 85      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 11.5
(-2.6)
A 		4.7
(-2.9)
A 		2.8
(-3)
A 		124.6
(3)
A 		122
B 10.5
(-2.2)
A 		14
(-1.5)
A 		38.3
(3)
A 		6.1
(-3)
A 		32
C 34.3
(0.4)
A 		11.3
(-2.3)
A 		5.5
(-3)
A 		55.6
(3)
A 		50
avr 18.8
(-2) 		10
(-3) 		15.5
(-2.4) 		62.1
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 32.3
(3)
A 		5.5
(-2.7)
A 		15.4
(-0.6)
A 		4
(-3)
A 		10.1
(-1.7)
A 		4.6
(-2.9)
A 		28
B 3.6
(-3)
A 		14.4
(-1)
A 		23.6
(0.7)
A 		36.2
(3)
A 		23.2
(0.6)
A 		4.3
(-2.9)
A 		33
C 5.3
(-3)
A 		5.9
(-2.9)
A 		14.1
(-1.7)
A 		45.8
(3)
A 		32.3
(1)
A 		8.1
(-2.6)
A 		41
avr 13.7
(-0.9) 		8.6
(-2.2) 		17.7
(0.1) 		28.7
(3) 		21.9
(1.2) 		5.7
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 4.2
(-1.8)
A 		1
(-2.9)
A 		0.7
(-3)
A 		18.2
(3)
A 		18
B 3.3
(-1.4)
A 		3.4
(-1.3)
A 		8.9
(3)
A 		1.3
(-3)
A 		8
C 11.3
(3)
A 		3.3
(-2.1)
A 		1.9
(-3)
A 		9.4
(1.8)
A 		9
avr 6.3
(0.2) 		2.6
(-3) 		3.8
(-2) 		9.6
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 6
(3)
A 		2
(-1.8)
A 		3.4
(-0.1)
A 		1
(-3)
A 		3.1
(-0.5)
A 		1.1
(-2.9)
A 		5
B 1.2
(-3)
A 		4.8
(-0.4)
A 		5.7
(0.2)
A 		9.6
(3)
A 		9.4
(2.9)
A 		1.6
(-2.7)
A 		8
C 2
(-2.9)
A 		1.8
(-3)
A 		3.6
(-1.7)
A 		9.2
(2.2)
A 		10.4
(3)
A 		2.7
(-2.4)
A 		9
avr 3.1
(-1.7) 		2.9
(-1.9) 		4.2
(-0.5) 		6.6
(2) 		7.6
(3) 		1.8
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191164_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13854
Sequence Type Exemplar sequence
Representative Public ID K06B4.9 NCBI
Target Description K06B4.9 /REP_DB=WormBase Gene ID /WP=CE11798 /TR=O45662 /GB=CAB05757.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074503(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074503 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-29) (srx-29) mRNA, complete cds. 11/11 None
K06B4.9 ENSEMBL cdna:known chromosome:CEL140:V:15699369:15700783:-1 gene:K06B4.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075784 1/11 Cross Hyb Matching Probes None
SNAP00000010513 8/11 Cross Hyb Matching Probes None
C44C1.2 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15699507-15700783(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, srx family
Gene Symbol srx-29
Ensembl K06B4.9
Entrez Gene 187057 Entrez gene
SwissProt O45662 EMBL-EBI
WormBase CE36311 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05757 Hypothetical protein K06B4.9 [Caenorhabditis elegans] ref|NP_506904.2| Serpentine Receptor, class X family member (srx-29) [Caenorhabditis elegans] 1.0E-169
blast NP_503333 Serpentine Receptor, class X family member (srx-32) [Caenorhabditis elegans] gb|AAB69948.3| Serpentine receptor, class x protein 32 [Caenorhabditis elegans] 1.0E-110
blast AAK84528 Serpentine receptor, class x protein 31 [Caenorhabditis elegans] ref|NP_001023913.1| Serpentine Receptor, class X family member (srx-31) [Caenorhabditis elegans] 1.0E-109
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 4.7E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506904.2 7 5-27,47-69,84-106,127-146,166-188,224-246,250-272
K06B4.9 7 5-27,47-69,84-106,127-146,166-188,224-246,250-272
Sequence
Target Sequence 
>C. ELEGANS:191164_AT
tagatactcacctcctatgattcacatctcacattatgttggaaacacttgcatgacaat
ttacgagatttcgaatttatctcatttattgattgctctcaatcgattctgcgtgctatt
ttttcagcatcgatatgagcaacttttcagtaacccgaacacagtaatcatgcggaatta
cttgtggataacttgtattatattttgtgcagtctgctatgagttctccaagtgcttcct
caaatacaaccccaaccactggtcattcgaatttgagaattcggatttttgcgattctct
gatctggtattcggatttccttttcaacacgggaatcgatataatcactttgtttctgaa
tttactgactgcttacaaaggaagaaaacagtcacgagttctgataaatgcggccggatt
gaaagtttccgcgattcaacggagaagagaatggaattttgtgaagcagacctgttttca
aggcttatcgatatttacaggccaggttgctttttattttgtggctccagtcattgatgc
agactgggtcattgctcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGATACTCACCTCCTATGATTCAC 135 651 210 Antisense
AATCGATTCTGCGTGCTATTTTTTC 382 169 310 Antisense
GCAACTTTTCAGTAACCCGAACACA 637 317 348 Antisense
TGTGCAGTCTGCTATGAGTTCTCCA 618 555 415 Antisense
CCAAGTGCTTCCTCAAATACAACCC 535 275 437 Antisense
ACCCCAACCACTGGTCATTCGAATT 194 89 458 Antisense
GGATTTTTGCGATTCTCTGATCTGG 516 509 492 Antisense
GTATTCGGATTTCCTTTTCAACACG 372 451 516 Antisense
TACAGGCCAGGTTGCTTTTTATTTT 704 643 705 Antisense
TTTGTGGCTCCAGTCATTGATGCAG 433 663 727 Antisense
GATGCAGACTGGGTCATTGCTCAAT 249 413 745 Antisense
Sequence Source Affymetrix Proprietary Database