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[191163_at] G-protein coupled receptor

Description T02E9.1 /REP_DB=WormBase Gene ID /WP=CE13062 /TR=O18014 /GB=CAB07651.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 14      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 80      6grp_total > 02      4grp_total > 13      6grp_highest_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 388
1 2 3 4 range
A 267.3
(-0.5)
P 		192
(-2.1)
P 		145.9
(-3)
P 		442.4
(3)
P 		297
B 301
(0.1)
P 		182.6
(-2.4)
P 		151
(-3)
P 		445.2
(3)
P 		294
C 311.5
(-0.2)
P 		203.4
(-1.9)
P 		130.3
(-3)
P 		518
(3)
P 		388
avr 293.3
(-0.2) 		192.7
(-2.1) 		142.4
(-3) 		468.5
(3) 		326

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 137
1 2 3 4 5 6 range
A 207.3
(3)
P 		207.2
(3)
P 		170.8
(-0.5)
P 		147.3
(-2.7)
P 		198.1
(2.1)
P 		144.6
(-3)
P 		63
B 210.7
(1)
P 		197.7
(-0.1)
P 		235.4
(3)
P 		194.6
(-0.4)
P 		229.7
(2.5)
P 		162.9
(-3)
P 		73
C 219.3
(-0.2)
P 		281.3
(3)
P 		177.7
(-2.3)
P 		216.9
(-0.3)
P 		191.4
(-1.6)
P 		163.6
(-3)
P 		118
avr 212.4
(1.6) 		228.7
(3) 		194.6
(0.1) 		186.3
(-0.5) 		206.4
(1.1) 		157
(-3) 		72
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 97.3
(3)
P 		41.7
(-2.6)
P 		38.1
(-3)
P 		64.8
(-0.3)
P 		59
B 96
(3)
P 		45.1
(-2)
P 		35
(-3)
P 		94.9
(2.9)
P 		61
C 103.1
(3)
P 		58.5
(-1.6)
P 		45.4
(-3)
P 		87.3
(1.4)
P 		58
avr 98.8
(3) 		48.4
(-2.1) 		39.5
(-3) 		82.3
(1.3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 38.2
(-2.5)
P 		73.7
(3)
P 		37.2
(-2.7)
P 		37.4
(-2.7)
P 		59.8
(0.8)
P 		35.2
(-3)
P 		39
B 73.3
(0.1)
P 		65.8
(-0.9)
P 		57.2
(-2.2)
P 		51.5
(-3)
P 		93.3
(3)
P 		60.7
(-1.7)
P 		42
C 81.3
(2.4)
P 		85.8
(3)
P 		45.2
(-2.8)
P 		43.6
(-3)
P 		61.9
(-0.4)
P 		54.8
(-1.4)
P 		42
avr 64.3
(0.9) 		75.1
(3) 		46.5
(-2.6) 		44.2
(-3) 		71.7
(2.3) 		50.2
(-1.8) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191163_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14706
Sequence Type Exemplar sequence
Representative Public ID T02E9.1 NCBI
Target Description T02E9.1 /REP_DB=WormBase Gene ID /WP=CE13062 /TR=O18014 /GB=CAB07651.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073482(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073482 NCBI Caenorhabditis elegans T02E9.1 (T02E9.1) mRNA, complete cds. 11/11 None
SNAP00000026340 ENSEMBL cdna:SNAP chromosome:CEL140:V:11352061:11353366:-1 11/11 None
GENEFINDER00000026347 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11352061:11355581:-1 11/11 None
T02E9.1 ENSEMBL cdna:known chromosome:CEL140:V:11352061:11355581:-1 gene:T02E9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11352060-11355581(-) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor
Ensembl T02E9.1
Entrez Gene 179570 Entrez gene
SwissProt O18014 EMBL-EBI
WormBase CE13062 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07651 Hypothetical protein T02E9.1 [Caenorhabditis elegans] ref|NP_505883.1| T02E9.1 [Caenorhabditis elegans] 0.0
blast CAE75227 Hypothetical protein CBG23177 [Caenorhabditis briggsae] 0.0
blast CAB07651 Hypothetical protein T02E9.1 [Caenorhabditis elegans] ref|NP_505883.1| T02E9.1 [Caenorhabditis elegans] 1.0E-143
blast CAE75227 Hypothetical protein CBG23177 [Caenorhabditis briggsae] 1.0E-125
blast AAA27938 Hypothetical protein C06G4.5 [Caenorhabditis elegans] 3.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 2.1E-17
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505883.1 6 25-47,62-84,142-164,200-222,243-265,285-307
T02E9.1 6 25-47,62-84,142-164,200-222,243-265,285-307
SNAP00000026340 4 32-54,90-112,133-155,175-197
GENEFINDER00000026347 6 25-47,62-84,142-164,200-222,243-265,285-307
Sequence
Target Sequence 
>C. ELEGANS:191163_AT
aggtttgggtgtctgcatttctgatcttctttgcattcttacttccatgcactcttctaa
cctacttttacgcgaagatcgtccttcgtctgaggagacaaagaagaacaatgctccaat
ctcgaattcccctccgccgcattacaatatacacaatggcagccacgttcttctatcttt
cgtgtcatattccattttggctcccacagatctacaacattttctcgacagttcttgggc
acaaaatgaatccaaaagtcatgacattcacctattattcacatcttcttccgttcatat
cggcggcatttaactggatattctatgctcgacttaatagtcaattcaaaaaaggattgg
ttctagttacggaaagaatgatcagaaagcgaacaaaatcgatgcatgagaaaggataca
gtgaggcagctgttgagcttacgagcaagttcgatgatgtcccattgatgtgtccacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGTTTGGGTGTCTGCATTTCTGAT 198 55 608 Antisense
TCTGATCTTCTTTGCATTCTTACTT 194 609 627 Antisense
GAAGATCGTCCTTCGTCTGAGGAGA 169 339 681 Antisense
GAACAATGCTCCAATCTCGAATTCC 347 353 713 Antisense
AGCCACGTTCTTCTATCTTTCGTGT 237 85 768 Antisense
TGTCATATTCCATTTTGGCTCCCAC 366 559 790 Antisense
GCTCCCACAGATCTACAACATTTTC 311 299 807 Antisense
TTTTCTCGACAGTTCTTGGGCACAA 444 677 827 Antisense
GACATTCACCTATTATTCACATCTT 319 371 870 Antisense
ATCTTCTTCCGTTCATATCGGCGGC 482 31 890 Antisense
TGATGTCCCATTGATGTGTCCACAC 459 567 1062 Antisense
Sequence Source Affymetrix Proprietary Database