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[191160_at] 7TM chemoreceptor, str family

Description F52D2.9 /REP_DB=WormBase Gene ID /WP=CE25896 /GEN=str-79 /TR=Q9TXM5 /GB=AAF02104.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 11      4grp_total > 23      6grp_cgc > 53      6grp_cgc_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 43.9
(3)
A 		5.7
(-2.9)
A 		5.1
(-3)
A 		8.3
(-2.5)
A 		39
B 51.3
(3)
A 		17.9
(-1.2)
A 		3.9
(-3)
A 		5.2
(-2.8)
A 		47
C 10.4
(-2.7)
A 		7.1
(-3)
A 		12.7
(-2.5)
A 		75.8
(3)
A 		69
avr 35.2
(3) 		10.2
(-2.4) 		7.2
(-3) 		29.8
(1.8) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 9.8
(-2.3)
A 		35.8
(3)
A 		8.7
(-2.5)
A 		18.6
(-0.5)
A 		6.5
(-3)
A 		8.1
(-2.7)
A 		29
B 10
(-1.7)
A 		40.6
(3)
A 		35.8
(2.3)
A 		13
(-1.3)
A 		7
(-2.2)
A 		1.7
(-3)
A 		39
C 16.7
(-1.8)
A 		78.4
(3)
A 		9.1
(-2.4)
A 		19.6
(-1.6)
A 		3.5
(-2.9)
A 		1.6
(-3)
A 		77
avr 12.2
(-1.9) 		51.6
(3) 		17.9
(-1.2) 		17.1
(-1.3) 		5.7
(-2.8) 		3.8
(-3) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 16
(3)
A 		1.2
(-3)
A 		1.3
(-3)
A 		1.2
(-3)
A 		15
B 16.4
(3)
A 		4.4
(-1.6)
A 		0.9
(-3)
A 		1.1
(-2.9)
A 		16
C 3.4
(-2.3)
A 		2.1
(-3)
A 		4.4
(-1.7)
A 		12.8
(3)
A 		11
avr 11.9
(3) 		2.6
(-2.8) 		2.2
(-3) 		5
(-1.3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 1.8
(-3)
A 		12.7
(3)
A 		1.9
(-2.9)
A 		4.7
(-1.4)
A 		1.9
(-2.9)
A 		2
(-2.9)
A 		11
B 3.5
(-1.7)
A 		13.5
(3)
A 		8.7
(0.8)
A 		3.5
(-1.7)
A 		2.8
(-2)
A 		0.6
(-3)
A 		13
C 6.2
(-1.5)
A 		23.9
(3)
A 		2.3
(-2.5)
A 		3.9
(-2.1)
A 		1.1
(-2.8)
A 		0.5
(-3)
A 		23
avr 3.8
(-1.9) 		16.7
(3) 		4.3
(-1.7) 		4
(-1.9) 		1.9
(-2.7) 		1
(-3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191160_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18529
Sequence Type Exemplar sequence
Representative Public ID F52D2.9 NCBI
Target Description F52D2.9 /REP_DB=WormBase Gene ID /WP=CE25896 /GEN=str-79 /TR=Q9TXM5 /GB=AAF02104.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075962(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075962 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-79) (str-79) mRNA, complete cds. 11/11 None
GENEFINDER00000016862 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1969869:1972635:1 11/11 None
F52D2.9 ENSEMBL cdna:known chromosome:CEL140:X:1969869:1972651:1 gene:F52D2.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016857 4/11 Cross Hyb Matching Probes None
SNAP00000016858 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1969868-1972651(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-79
Ensembl F52D2.9
Entrez Gene 191988 Entrez gene
SwissProt Q9TXM5 EMBL-EBI
WormBase CE25896 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF02104 Seven tm receptor protein 79 [Caenorhabditis elegans] ref|NP_508363.1| Seven TM Receptor family member (str-79) [Caenorhabditis elegans] 0.0
blast C89473 protein F52D2.7 [imported] - Caenorhabditis elegans 1.0E-172
blast C89473 protein F52D2.7 [imported] - Caenorhabditis elegans 1.0E-169
blast CAB04851 Hypothetical protein T26H2.6 [Caenorhabditis elegans] ref|NP_507737.1| Seven TM Receptor family member (str-81) [Caenorhabditis elegans] 2.0E-70
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508363.1 7 15-37,50-72,92-114,138-160,206-228,253-275,290-312
F52D2.9 7 15-37,50-72,92-114,138-160,206-228,253-275,290-312
GENEFINDER00000016862 7 15-37,50-72,92-114,138-160,206-228,253-275,290-312
Sequence
Target Sequence 
>C. ELEGANS:191160_AT
tcttggtatccagctaacaccggcaaaggacttggcgattcaggagacattggcagatgc
ttacaacgtgactccggataacgtgtattatattgcagtgcaatattttgatcgagatgc
acacaatgtgaaggtttatgacactatatcgttcaccgttgctattgggaacattctcat
ttttttcgggatggtggttttcattttcgtctgtggagtacggacattttttgctgcaca
acggaacactgccgagttgctgaatcacaaacagctccagaaggatttgactatagcgct
tttgattcaaactgttgtcccatctttgcttattttcctgccgtgtgcaattttctacct
gcttccacttttcgagcaacctcttggcgttgatgcaaacattctgctaattgcaatgga
tattttctcgaacgttggccccataagtattctgttcacattcaagaactatcggctgta
cattttaaagctctgccgtcgcaaaattgctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTGGTATCCAGCTAACACCGGCA 630 617 477 Antisense
GATGCTTACAACGTGACTCCGGATA 671 411 532 Antisense
GACACTATATCGTTCACCGTTGCTA 77 367 616 Antisense
GTACGGACATTTTTTGCTGCACAAC 318 459 694 Antisense
GAACACTGCCGAGTTGCTGAATCAC 72 353 720 Antisense
TCAAACTGTTGTCCCATCTTTGCTT 620 629 783 Antisense
TTGCTTATTTTCCTGCCGTGTGCAA 543 701 802 Antisense
GCCGTGTGCAATTTTCTACCTGCTT 15 285 816 Antisense
CGAGCAACCTCTTGGCGTTGATGCA 149 251 849 Antisense
TTGGCCCCATAAGTATTCTGTTCAC 262 707 911 Antisense
AGCTCTGCCGTCGCAAAATTGCTCA 683 79 965 Antisense
Sequence Source Affymetrix Proprietary Database