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[191159_s_at]

Description K07A12.4 /REP_DB=WormBase Gene ID /WP=CE25933 /TR=P90922 /GB=CAB03180.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=elongation factor 1-alpha
Cluster 6grp_highest_10_10 > 54      6grp_high1_10_10 > 44      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 73      6grp_total > 10      4grp_total > 62      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 593
1 2 3 4 range
A 803.1
(3)
P 		459.7
(-1.7)
P 		651.4
(0.9)
P 		361.5
(-3)
P 		442
B 680.2
(-0.8)
P 		519
(-3)
P 		954.8
(3)
P 		518.6
(-3)
P 		436
C 841.9
(3)
P 		651
(-0.4)
P 		654.3
(-0.4)
P 		507.2
(-3)
P 		335
avr 775.1
(3) 		543.2
(-1.4) 		753.5
(2.6) 		462.4
(-3) 		313

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 342
1 2 3 4 5 6 range
A 425.8
(-3)
P 		768.2
(3)
P 		520.7
(-1.3)
P 		456.2
(-2.5)
P 		485.2
(-2)
P 		591.8
(-0.1)
P 		342
B 479.3
(-2.5)
P 		621.4
(1.3)
P 		684.7
(3)
P 		561.2
(-0.3)
P 		461.6
(-3)
P 		624.1
(1.4)
P 		223
C 526.2
(-3)
P 		682.6
(3)
P 		605.5
(0)
P 		542.6
(-2.4)
P 		535.2
(-2.7)
P 		622.2
(0.7)
P 		156
avr 477.1
(-3) 		690.7
(3) 		603.6
(0.6) 		520
(-1.8) 		494
(-2.5) 		612.7
(0.8) 		214
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 240
1 2 3 4 range
A 292.4
(3)
P 		99.8
(-1.8)
P 		170.3
(-0.1)
P 		52.9
(-3)
P 		240
B 216.9
(2.8)
P 		128.2
(-2)
P 		221.2
(3)
P 		110.5
(-3)
P 		111
C 278.7
(3)
P 		187.2
(0.2)
P 		228.1
(1.4)
P 		85.5
(-3)
P 		193
avr 262.7
(3) 		138.4
(-1.2) 		206.5
(1.1) 		83
(-3) 		180

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 195
1 2 3 4 5 6 range
A 78.5
(-3)
P 		273.2
(3)
P 		113.4
(-1.9)
P 		115.7
(-1.9)
P 		146.4
(-0.9)
P 		144.1
(-1)
P 		195
B 166.8
(-1.7)
P 		206.9
(1.2)
P 		166.3
(-1.7)
P 		148.7
(-3)
P 		187.6
(-0.2)
P 		232.7
(3)
P 		84
C 195.1
(2.2)
P 		208.3
(3)
P 		154.1
(-0.3)
P 		109.1
(-3)
P 		173.2
(0.9)
P 		208.3
(3)
P 		99
avr 146.8
(-1.7) 		229.5
(3) 		144.6
(-1.9) 		124.5
(-3) 		169.1
(-0.5) 		195
(1) 		105
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191159_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2336
Sequence Type Exemplar sequence
Representative Public ID K07A12.4 NCBI
Target Description K07A12.4 /REP_DB=WormBase Gene ID /WP=CE25933 /TR=P90922 /GB=CAB03180.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=elongation factor 1-alpha
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026385(11), NM_001026384(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026385 NCBI Caenorhabditis elegans K07A12.4b (K07A12.4) mRNA, complete cds. 11/11 None
NM_001026384 NCBI Caenorhabditis elegans K07A12.4a (K07A12.4) mRNA, complete cds. 11/11 None
SNAP00000033549 ENSEMBL cdna:SNAP chromosome:CEL140:I:8695930:8698960:-1 10/11 None
GENEFINDER00000033559 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8695930:8699054:-1 10/11 None
K07A12.4 ENSEMBL cdna:known chromosome:CEL140:I:8695820:8699054:-1 gene:K07A12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8695860-8698985(-) 100.0 100.0
Public Domain and Genome References
Ensembl K07A12.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAI79193 Hypothetical protein K07A12.4b [Caenorhabditis elegans] ref|NP_001021556.1| K07A12.4b [Caenorhabditis elegans] 0.0
blast CAB03180 Hypothetical protein K07A12.4a [Caenorhabditis elegans] ref|NP_001021555.1| K07A12.4a [Caenorhabditis elegans] 0.0
blast CAE66947 Hypothetical protein CBG12339 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004161 EMBL-EBI Elongation factor Tu, domain 2 9.8E-6
Pfam IPR000795 EMBL-EBI Protein synthesis factor, GTP-binding 1.1E-89
Pfam IPR004160 EMBL-EBI Elongation factor Tu, C-terminal 1.4E-15
Pfam IPR004161 EMBL-EBI Elongation factor Tu, domain 2 9.8E-6
Pfam IPR000795 EMBL-EBI Protein synthesis factor, GTP-binding 1.1E-89
Pfam IPR004160 EMBL-EBI Elongation factor Tu, C-terminal 1.4E-15
Pfam IPR004161 EMBL-EBI Elongation factor Tu, domain 2 9.8E-6
Pfam IPR000795 EMBL-EBI Protein synthesis factor, GTP-binding 1.1E-89
Pfam IPR004160 EMBL-EBI Elongation factor Tu, C-terminal 1.4E-15
Pfam IPR004160 EMBL-EBI Elongation factor Tu, C-terminal 1.4E-15
Sequence
Target Sequence 
>C. ELEGANS:191159_S_AT
gtcaagtgttactgcagctactgtgaaagaatgcgcaaataatgacggttcaaggcactg
ctttgctggagattatattctattgactcttcaaggcacatttgaacctgaatccattca
aacaggctctgttgttgtacgtgctggtccagatactctgattccatcgaaaaagtttga
agttcgattggttgcctttgaaattgctatgcctattatcaaggtatacttttgcatttc
aaatataaatttaaaaacgtattgttttcagggtgccaaagccgagttatatgcacattc
tttgtgtgttccatgtactttcaccaatcttctgtatacaatcaacaaatcaaatggaga
aatattaaaaaaaggaccgagatttattgctaaaggagcgtcggcagttgttgaaatcga
aactgaatatgatatcgcaattgaaacattcacaagttgccgagctcttggacgagtcac
ttttcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCAAGTGTTACTGCAGCTACTGTG 3 465 1350 Antisense
ACGGTTCAAGGCACTGCTTTGCTGG 22 97 1394 Antisense
CAGGCTCTGTTGTTGTACGTGCTGG 545 207 1472 Antisense
GCTGGTCCAGATACTCTGATTCCAT 393 295 1492 Antisense
GAAGTTCGATTGGTTGCCTTTGAAA 225 337 1528 Antisense
TGTTTTCAGGGTGCCAAAGCCGAGT 473 557 1612 Antisense
AAGCCGAGTTATATGCACATTCTTT 377 149 1628 Antisense
ATTCTTTGTGTGTTCCATGTACTTT 363 11 1646 Antisense
CCATGTACTTTCACCAATCTTCTGT 611 271 1660 Antisense
AACATTCACAAGTTGCCGAGCTCTT 26 139 1794 Antisense
GAGCTCTTGGACGAGTCACTTTTCG 347 387 1811 Antisense
Sequence Source Affymetrix Proprietary Database