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[191158_at] 7TM receptor, srx family

Description F09F3.4 /REP_DB=WormBase Gene ID /WP=CE09287 /TR=P90819 /GB=CAB02904.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster 6grp_total > 54      4grp_total > 30      6grp_cgc > 45      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 17.8
(-0.1)
A 		28.1
(2.1)
A 		4.1
(-3)
A 		32.1
(3)
A 		28
B 37
(3)
A 		1.8
(-3)
A 		4.4
(-2.6)
A 		10.5
(-1.5)
A 		35
C 23.3
(3)
A 		15.7
(0.5)
A 		5.2
(-3)
A 		10.4
(-1.3)
A 		18
avr 26
(3) 		15.2
(-0) 		4.6
(-3) 		17.7
(0.7) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 8.9
(-1.5)
A 		9.2
(-1.5)
A 		31.8
(3)
A 		1.5
(-3)
A 		2.5
(-2.8)
A 		20.6
(0.8)
A 		30
B 13.7
(1.5)
A 		2.5
(-3)
A 		11.1
(0.5)
A 		2.4
(-3)
A 		17.5
(3)
A 		3
(-2.8)
A 		15
C 2.6
(-2.9)
A 		26.9
(3)
A 		2.1
(-3)
A 		4.3
(-2.5)
A 		4.9
(-2.3)
A 		15.3
(0.2)
A 		25
avr 8.4
(-0.2) 		12.9
(2) 		15
(3) 		2.7
(-3) 		8.3
(-0.3) 		13
(2) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 6.5
(3)
A 		6.1
(2.6)
A 		1.1
(-3)
A 		4.7
(1)
A 		5
B 11.8
(3)
A 		0.4
(-3)
A 		1
(-2.7)
A 		2.2
(-2.1)
A 		11
C 7.7
(3)
A 		4.5
(-0.3)
A 		1.8
(-3)
A 		1.8
(-3)
A 		6
avr 8.7
(3) 		3.7
(-1.1) 		1.3
(-3) 		2.9
(-1.7) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.6
(-1.9)
A 		3.3
(-0.3)
A 		6.9
(3)
A 		0.4
(-3)
A 		0.8
(-2.6)
A 		5
(1.2)
A 		7
B 4.8
(0.9)
A 		0.8
(-2.8)
A 		2.7
(-1.1)
A 		0.6
(-3)
A 		7.1
(3)
A 		1.1
(-2.5)
A 		7
C 1
(-2.6)
A 		8.2
(3)
A 		0.5
(-3)
A 		0.9
(-2.7)
A 		1.6
(-2.1)
A 		5.1
(0.6)
A 		8
avr 2.5
(0.3) 		4.1
(3) 		3.4
(1.8) 		0.6
(-3) 		3.2
(1.5) 		3.7
(2.3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191158_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14621
Sequence Type Exemplar sequence
Representative Public ID F09F3.4 NCBI
Target Description F09F3.4 /REP_DB=WormBase Gene ID /WP=CE09287 /TR=P90819 /GB=CAB02904.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074030(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074030 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-133) (srx-133) mRNA, complete cds. 11/11 None
GENEFINDER00000022407 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13851613:13855772:1 9/11 None
F09F3.4 ENSEMBL cdna:known chromosome:CEL140:V:13851268:13852558:1 gene:F09F3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13851267-13852406(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, srx family
Gene Symbol srx-133
Ensembl F09F3.4
Entrez Gene 184252 Entrez gene
SwissProt P90819 EMBL-EBI
WormBase CE36289 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02910 Hypothetical protein F09F3.5 [Caenorhabditis elegans] ref|NP_506432.1| F09F3.5 [Caenorhabditis elegans] 0.0
blast CAE66225 Hypothetical protein CBG11467 [Caenorhabditis briggsae] 0.0
blast CAE65447 Hypothetical protein CBG10411 [Caenorhabditis briggsae] 0.0
blast CAB02904 Hypothetical protein F09F3.4 [Caenorhabditis elegans] ref|NP_506431.2| Serpentine Receptor, class X family member (srx-133) [Caenorhabditis elegans] 1.0E-171
blast CAE57803 Hypothetical protein CBG00827 [Caenorhabditis briggsae] 4.0E-58
blast CAB03212 Hypothetical protein F32H5.6 [Caenorhabditis elegans] emb|CAB04254.2| Hypothetical protein F32H5.6 [Caenorhabditis elegans] ref|NP_506315.2| Serpentine Receptor, class X family member (srx-125) [Caenorhabditis elegans] 2.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506431.2 7 10-27,47-69,89-108,121-143,174-196,217-239,249-271
F09F3.4 7 10-27,47-69,89-108,121-143,174-196,217-239,249-271
GENEFINDER00000022407 3 7-29,56-78,131-153
Sequence
Target Sequence 
>C. ELEGANS:191158_AT
ggaggttatatttttgggccattgtgtcaaattttgatggctgctaatcgagttatcatc
atgtattttccattttggagaatgaaaatcagtagatttcctagtacaaatgttgctgtt
tttgtttgtgctttcgtatctctttattgtagtgttgcaggaatgcgtggcccttgtgtt
ttgacttatcacccagacacgctggcatggagccctgaactctcgacttgcacagattca
atggatggtttacaacttccaattatcatactcttgaccatggtttcaattattttcaat
ttcatcgcagcattcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGGTTATATTTTTGGGCCATTGT 189 517 277 Antisense
GGCTGCTAATCGAGTTATCATCATG 338 539 315 Antisense
GTTTTTGTTTGTGCTTTCGTATCTC 479 449 394 Antisense
TGTGCTTTCGTATCTCTTTATTGTA 380 555 403 Antisense
AGTGTTGCAGGAATGCGTGGCCCTT 686 57 427 Antisense
GGCCCTTGTGTTTTGACTTATCACC 300 543 445 Antisense
CTTATCACCCAGACACGCTGGCATG 32 223 461 Antisense
GAACTCTCGACTTGCACAGATTCAA 406 349 493 Antisense
GGTTTACAACTTCCAATTATCATAC 85 507 523 Antisense
TATCATACTCTTGACCATGGTTTCA 655 659 540 Antisense
TTTTCAATTTCATCGCAGCATTCAA 147 677 569 Antisense
Sequence Source Affymetrix Proprietary Database