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[191156_at] proline rich proteoglycan

Description C08B6.10 /REP_DB=WormBase Gene ID /WP=CE05247 /TR=Q17821 /GB=CAA96592.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=proline rich proteoglycan
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 72      4grp_highest_8_8 > 03      4grp_high_8_8 > 47      6grp_highest_nonorm > 62      6grp_total > 72      4grp_total > 41      6grp_highest_sub > 03_04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 517
1 2 3 4 range
A 433.9
(-3)
P 		715.8
(0.4)
P 		935.9
(3)
P 		607.8
(-0.9)
P 		502
B 419.4
(-3)
P 		810.3
(2.6)
P 		837.7
(3)
P 		563.9
(-0.9)
P 		418
C 448.9
(-3)
P 		798.6
(3)
P 		694.4
(1.2)
P 		560.4
(-1.1)
P 		350
avr 434.1
(-3) 		774.9
(2.3) 		822.7
(3) 		577.4
(-0.8) 		389

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 562
1 2 3 4 5 6 range
A 440.3
(-1.6)
P 		443.3
(-1.6)
P 		624.5
(2.6)
P 		642.2
(3)
P 		396.6
(-2.6)
P 		380.8
(-3)
P 		261
B 330.7
(-3)
P 		499
(-0.2)
P 		693
(3)
P 		606.4
(1.6)
P 		526.6
(0.2)
P 		419.3
(-1.5)
P 		362
C 371
(-1.9)
P 		264.1
(-3)
P 		611.1
(0.7)
P 		826.2
(3)
P 		667.2
(1.3)
P 		439
(-1.1)
P 		562
avr 380.7
(-3) 		402.1
(-2.6) 		642.9
(2.1) 		691.6
(3) 		530.1
(-0.1) 		413
(-2.4) 		311
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 156
1 2 3 4 range
A 158
(-0.3)
P 		155.4
(-0.4)
P 		244.7
(3)
P 		89
(-3)
P 		156
B 133.7
(-2)
P 		200.1
(3)
P 		194.1
(2.5)
P 		120.2
(-3)
P 		80
C 148.6
(-0.8)
P 		229.6
(2.5)
P 		242
(3)
P 		94.5
(-3)
P 		148
avr 146.8
(-0.8) 		195
(1.5) 		226.9
(3) 		101.2
(-3) 		126

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 81.2
(-3)
P 		157.6
(2.6)
P 		136
(1)
P 		162.9
(3)
P 		119.7
(-0.2)
P 		92.7
(-2.2)
P 		82
B 115.1
(-3)
P 		166.1
(0.1)
P 		168.3
(0.2)
P 		160.6
(-0.2)
P 		214
(3)
P 		156.3
(-0.5)
P 		99
C 137.5
(-0.5)
P 		80.6
(-3)
P 		155.5
(0.3)
P 		166.1
(0.8)
P 		215.9
(3)
P 		147
(-0.1)
P 		135
avr 111.3
(-3) 		134.8
(-1) 		153.3
(0.5) 		163.2
(1.3) 		183.2
(3) 		132
(-1.3) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191156_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11289
Sequence Type Exemplar sequence
Representative Public ID C08B6.10 NCBI
Target Description C08B6.10 /REP_DB=WormBase Gene ID /WP=CE05247 /TR=Q17821 /GB=CAA96592.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=proline rich proteoglycan
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073202(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073202 NCBI Caenorhabditis elegans C08B6.10 (C08B6.10) mRNA, complete cds. 11/11 None
SNAP00000004954 ENSEMBL cdna:SNAP chromosome:CEL140:V:10128108:10130060:1 11/11 None
GENEFINDER00000004963 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10128108:10130060:1 11/11 None
C08B6.10 ENSEMBL cdna:known chromosome:CEL140:V:10128089:10130118:1 gene:C08B6.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10128107-10130060(+) 100.0 100.0
Public Domain and Genome References
Gene Title proline rich proteoglycan
Ensembl C08B6.10
Entrez Gene 179408 Entrez gene
SwissProt Q17821 EMBL-EBI
WormBase CE05247 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96592 Hypothetical protein C08B6.10 [Caenorhabditis elegans] ref|NP_505603.1| C08B6.10 [Caenorhabditis elegans] 3.0E-33
Sequence
Target Sequence 
>C. ELEGANS:191156_AT
gagaggaccaccaggtattccttcgccagccaatcctacaccttcaaatccggtaaccgc
tgctccaattagacggcaaccaactgtaatacaaacaacatgggctccacagatacagca
accccagcagcagctagagtctccacagaataattgggatcaacaacagcagtcaacaga
tgaagaatggcgtcctgattggagagacagaggacctccaccaccagattttgatggtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAGGACCACCAGGTATTCCTTCG 247 393 75 Antisense
CCAATCCTACACCTTCAAATCCGGT 526 275 104 Antisense
ACACCTTCAAATCCGGTAACCGCTG 264 105 112 Antisense
GTAACCGCTGCTCCAATTAGACGGC 274 461 127 Antisense
TAGACGGCAACCAACTGTAATACAA 50 651 144 Antisense
ATGGGCTCCACAGATACAGCAACCC 546 49 174 Antisense
GCAGCAGCTAGAGTCTCCACAGAAT 587 313 201 Antisense
TGGGATCAACAACAGCAGTCAACAG 475 553 229 Antisense
GAATGGCGTCCTGATTGGAGAGACA 25 333 259 Antisense
TGGAGAGACAGAGGACCTCCACCAC 213 549 274 Antisense
CCTCCACCACCAGATTTTGATGGTT 133 267 289 Antisense
Sequence Source Affymetrix Proprietary Database