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[191155_at] 7TM chemoreceptor, sri family

Description T24A6.4 /REP_DB=WormBase Gene ID /WP=CE14130 /GEN=sri-21 /TR=O61946 /GB=AAC17792.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 10      4grp_total > 04      6grp_cgc > 54      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 137
1 2 3 4 range
A 11.7
(-1.9)
A 		25.8
(3)
A 		9
(-2.8)
A 		8.5
(-3)
A 		17
B 48.2
(3)
A 		11.1
(-3)
A 		33.1
(0.6)
A 		35.6
(1)
A 		37
C 32.2
(-2.2)
A 		13.5
(-3)
A 		16.7
(-2.9)
A 		145.5
(3)
P 		132
avr 30.7
(-1.2) 		16.8
(-3) 		19.6
(-2.6) 		63.2
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 13
(-1.9)
A 		10.8
(-2.1)
A 		58.7
(3)
A 		15.7
(-1.6)
A 		12.5
(-1.9)
A 		2.6
(-3)
A 		56
B 15.4
(-2)
A 		57.5
(3)
A 		18
(-1.7)
A 		7.1
(-3)
A 		34.7
(0.3)
A 		26.5
(-0.7)
A 		50
C 7.8
(-2.5)
A 		45.3
(3)
A 		4.5
(-3)
A 		15.9
(-1.3)
A 		6.1
(-2.8)
A 		22.6
(-0.3)
A 		41
avr 12.1
(-3) 		37.9
(3) 		27.1
(0.5) 		12.9
(-2.8) 		17.8
(-1.7) 		17.2
(-1.8) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 4.3
(1.2)
A 		5.6
(3)
A 		2.3
(-1.5)
A 		1.2
(-3)
A 		4
B 15.4
(3)
A 		2.7
(-3)
A 		7.7
(-0.6)
A 		7.6
(-0.7)
A 		13
C 10.7
(-1)
A 		3.9
(-3)
A 		5.8
(-2.4)
A 		24.5
(3)
P 		21
avr 10.1
(2.1) 		4.1
(-3) 		5.3
(-2) 		11.1
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 2.4
(-2.1)
A 		3.8
(-1.4)
A 		12.8
(3)
A 		4
(-1.3)
A 		3.8
(-1.4)
A 		0.6
(-3)
A 		12
B 5.3
(-1.8)
A 		19.1
(3)
A 		4.4
(-2.1)
A 		1.9
(-3)
A 		14.1
(1.3)
A 		9.9
(-0.2)
A 		17
C 2.9
(-2.2)
A 		13.8
(3)
A 		1.2
(-3)
A 		3.2
(-2)
A 		2
(-2.6)
A 		7.6
(0)
A 		13
avr 3.5
(-2.7) 		12.2
(3) 		6.1
(-1) 		3
(-3) 		6.6
(-0.7) 		6
(-1) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191155_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15374
Sequence Type Exemplar sequence
Representative Public ID T24A6.4 NCBI
Target Description T24A6.4 /REP_DB=WormBase Gene ID /WP=CE14130 /GEN=sri-21 /TR=O61946 /GB=AAC17792.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071593(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071593 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-21) (sri-21) mRNA, complete cds. 11/11 None
GENEFINDER00000027447 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3549702:3551095:1 11/11 None
T24A6.4 ENSEMBL cdna:known chromosome:CEL140:V:3549723:3551095:1 gene:T24A6.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027427 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3549722-3551095(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-21
Ensembl T24A6.4
Entrez Gene 191901 Entrez gene
SwissProt O61946 EMBL-EBI
WormBase CE14130 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC17792 Serpentine receptor, class i protein 21 [Caenorhabditis elegans] ref|NP_503994.1| Serpentine Receptor, class I family member (sri-21) [Caenorhabditis elegans] 0.0
blast CAE58206 Hypothetical protein CBG01301 [Caenorhabditis briggsae] 1.0E-106
blast CAE72340 Hypothetical protein CBG19485 [Caenorhabditis briggsae] 2.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.1E-103
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.1E-103
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503994.1 7 13-35,48-70,90-112,133-155,190-212,238-260,275-297
T24A6.4 7 13-35,48-70,90-112,133-155,190-212,238-260,275-297
GENEFINDER00000027447 7 20-42,55-77,97-119,140-162,197-219,245-267,282-304
Sequence
Target Sequence 
>C. ELEGANS:191155_AT
gtatcaggctctgtcgaggattcggaatgaggtgtcaaaaagttcaataatctttgtttg
gattttcacccagattgtgattgctgtttgggtgactttttattattttaccggtatgga
tagatcaacttcattgaatattattgcgaagaactaccccactctttacccgaaattcct
agaacttgaagattttcaactgtatgtccgaaacgagattaccacctgttttcttatatc
tgctggttttatggcttcaatatttattgcaatcattatttattccactgttagaatgat
taatatactgaaaaatctagaaaaacacgtatccgcggtcaactttaaaaaacacaaggc
agcagtgggaagtcttattgctcagtttttaacaactcctatagcgtttgtgccacctgt
ggcgagtggagttttactatgttttgattttcagcatattcaagtgactaattgggctat
gctagccttagcctcctgccatggaaccgtcaactgtctggtaatgattttgacctgccc
acc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATCAGGCTCTGTCGAGGATTCGG 453 453 363 Antisense
GTGATTGCTGTTTGGGTGACTTTTT 152 485 439 Antisense
ATTATTGCGAAGAACTACCCCACTC 381 11 502 Antisense
TGTCCGAAACGAGATTACCACCTGT 210 557 567 Antisense
TACCACCTGTTTTCTTATATCTGCT 289 651 582 Antisense
TATCTGCTGGTTTTATGGCTTCAAT 436 659 599 Antisense
GAAAAACACGTATCCGCGGTCAACT 450 353 682 Antisense
ACAACTCCTATAGCGTTTGTGCCAC 365 113 754 Antisense
TTGGGCTATGCTAGCCTTAGCCTCC 325 707 834 Antisense
GCCATGGAACCGTCAACTGTCTGGT 373 281 860 Antisense
TGGTAATGATTTTGACCTGCCCACC 194 551 881 Antisense
Sequence Source Affymetrix Proprietary Database