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[191153_at] alpha adrenergic receptor

Description C25B8.5 /REP_DB=WormBase Gene ID /WP=CE04080 /TR=Q18149 /GB=AAK39190.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=alpha adrenergic receptor
Cluster 6grp_highest_10_10 > 01      6grp_high1_10_10 > 0      4grp_high_8_8 > 36      6grp_highest_nonorm > 90      6grp_total > 09      4grp_total > 44      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 92.2
(-0.8)
P 		129.9
(3)
P 		84.6
(-1.5)
P 		69.9
(-3)
A 		60
B 71.6
(-3)
P 		100.6
(3)
P 		74.4
(-2.4)
P 		84.4
(-0.4)
P 		29
C 100.5
(3)
P 		87.5
(1)
P 		63.5
(-2.6)
P 		60.9
(-3)
P 		40
avr 88.1
(-0.1) 		106
(3) 		74.2
(-2.6) 		71.7
(-3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 153.6
(3)
P 		78.7
(-2.7)
P 		76.8
(-2.9)
P 		101.5
(-1)
P 		93.7
(-1.6)
P 		75.4
(-3)
P 		78
B 121.7
(3)
P 		75.6
(-1.7)
P 		93.6
(0.2)
P 		74.7
(-1.8)
P 		68.2
(-2.4)
P 		62.5
(-3)
P 		59
C 71.6
(-2.1)
P 		103.6
(-0.3)
P 		107.3
(-0.1)
P 		164
(3)
P 		68.2
(-2.3)
P 		54.9
(-3)
P 		109
avr 115.6
(3) 		86
(-0.5) 		92.6
(0.3) 		113.4
(2.7) 		76.7
(-1.5) 		64.3
(-3) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 33.6
(3)
P 		28.2
(1.6)
P 		22.1
(0.1)
P 		10.2
(-3)
A 		23
B 22.8
(1.4)
P 		24.8
(3)
P 		17.2
(-3)
P 		18
(-2.4)
P 		8
C 33.3
(3)
P 		25.1
(0.9)
P 		22.1
(0.1)
P 		10.3
(-3)
P 		23
avr 29.9
(3) 		26
(1.6) 		20.5
(-0.3) 		12.8
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 28.3
(3)
P 		28
(2.8)
P 		16.7
(-3)
P 		25.7
(1.7)
P 		28.3
(3)
P 		18.3
(-2.2)
P 		12
B 42.3
(3)
P 		25.2
(-1.6)
P 		22.7
(-2.2)
P 		19.8
(-3)
P 		27.7
(-0.9)
P 		23.3
(-2.1)
P 		23
C 26.5
(0.3)
P 		31.6
(2.4)
P 		27.3
(0.7)
P 		33
(3)
P 		22.1
(-1.5)
P 		18.4
(-3)
P 		15
avr 32.4
(3) 		28.3
(1) 		22.2
(-1.9) 		26.2
(0) 		26
(-0.1) 		20
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191153_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17066
Sequence Type Exemplar sequence
Representative Public ID C25B8.5 NCBI
Target Description C25B8.5 /REP_DB=WormBase Gene ID /WP=CE04080 /TR=Q18149 /GB=AAK39190.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=alpha adrenergic receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076714(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076714 NCBI Caenorhabditis elegans C25B8.5 (C25B8.5) mRNA, complete cds. 11/11 None
SNAP00000010946 ENSEMBL cdna:SNAP chromosome:CEL140:X:6631882:6633680:-1 11/11 None
GENEFINDER00000010952 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6631882:6635228:-1 11/11 None
C25B8.5 ENSEMBL cdna:known chromosome:CEL140:X:6631882:6634990:-1 gene:C25B8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6631881-6634990(-) 94.2 100.0
Public Domain and Genome References
Gene Title alpha adrenergic receptor
Ensembl C25B8.5
Entrez Gene 182881 Entrez gene
SwissProt Q18149 EMBL-EBI
WormBase CE35409 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK39190 Hypothetical protein C25B8.5 [Caenorhabditis elegans] ref|NP_509115.2| C25B8.5 [Caenorhabditis elegans] 0.0
blast CAE65765 Hypothetical protein CBG10854 [Caenorhabditis briggsae] 1.0E-148
blast CAE65765 Hypothetical protein CBG10854 [Caenorhabditis briggsae] 1.0E-147
blast AAK39190 Hypothetical protein C25B8.5 [Caenorhabditis elegans] ref|NP_509115.2| C25B8.5 [Caenorhabditis elegans] 2.0E-98
blast AAM51520 Hypothetical protein C25B8.7 [Caenorhabditis elegans] ref|NP_741821.1| C25B8.7 [Caenorhabditis elegans] 2.0E-78
blast AAM51520 Hypothetical protein C25B8.7 [Caenorhabditis elegans] ref|NP_741821.1| C25B8.7 [Caenorhabditis elegans] 2.0E-77
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 1.7E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509115.2 5 26-48,63-85,110-132,152-174,248-270
C25B8.5 5 26-48,63-85,110-132,152-174,248-270
SNAP00000010946 2 4-21,95-117
GENEFINDER00000010952 7 58-80,116-138,158-180,205-227,247-269,290-312,338-360
Sequence
Target Sequence 
>C. ELEGANS:191153_AT
tattttgtgtgctcccagtaacttcttccctcatagtctcaatttacctgtttaatctca
ccagaagtaaacgaaacgcaactaacgccggtgacacgagcgctttcaagaacaaggtca
agtcattggcatttatttttgccacgactacctggacttcgtgcagtttactgccttatc
gcattgttaatctggctcgtattcacttgttcacatggtccgaactgagttgtgaaggca
aacaaaggatgaattggattgcatgggtacttgtgtatcttcttactctcaatccgataa
tcaatccactaatcacgtcgctgatctacgctccttaccgtctaacaatcaagaagtttt
tagtaaatataccagttgggaaccggcctttgtattcttaccaaccggatggtttgcagt
ctgacagcagcttcgcatcggtccgacgaaacaggaatcgacgatcatcatgcacagagc
tggccagcttgagacagtcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTTTGTGTGCTCCCAGTAACTTC 516 661 635 Antisense
TCTTCCCTCATAGTCTCAATTTACC 455 617 658 Antisense
TAACGCCGGTGACACGAGCGCTTTC 683 637 717 Antisense
GACTACCTGGACTTCGTGCAGTTTA 365 371 780 Antisense
GCAGTTTACTGCCTTATCGCATTGT 156 313 797 Antisense
TAATCTGGCTCGTATTCACTTGTTC 481 635 822 Antisense
GGTACTTGTGTATCTTCTTACTCTC 280 505 900 Antisense
CTAATCACGTCGCTGATCTACGCTC 271 227 943 Antisense
GCCTTTGTATTCTTACCAACCGGAT 542 261 1020 Antisense
GTTTGCAGTCTGACAGCAGCTTCGC 367 451 1046 Antisense
GAGCTGGCCAGCTTGAGACAGTCTA 487 387 1111 Antisense
Sequence Source Affymetrix Proprietary Database