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[191152_at] 7TM chemoreceptor, str family

Description K10C9.6 /REP_DB=WormBase Gene ID /WP=CE18047 /GEN=str-67 /TR=O61888 /GB=AAC17673.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 40      4grp_total > 18      6grp_cgc > 40      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 1.5
(-3)
A 		14.3
(-1.2)
A 		8.9
(-1.9)
A 		43.7
(3)
A 		42
B 23.7
(0.9)
A 		34.4
(3)
A 		3.2
(-3)
A 		17.2
(-0.3)
A 		31
C 11.3
(-3)
A 		18.4
(-2.1)
A 		31.3
(-0.5)
A 		59.6
(3)
A 		48
avr 12.2
(-3) 		22.4
(-0.8) 		14.5
(-2.5) 		40.2
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 8.4
(-2.5)
A 		23.1
(-0.2)
A 		15.5
(-1.4)
A 		43.7
(3)
A 		5.2
(-3)
A 		5
(-3)
A 		39
B 23.9
(3)
A 		5
(-2.3)
A 		2.6
(-2.9)
A 		7.6
(-1.5)
A 		10
(-0.9)
A 		2.4
(-3)
A 		22
C 14.4
(0.6)
A 		18.8
(1.8)
A 		23
(3)
A 		7.6
(-1.4)
A 		1.8
(-3)
A 		14.3
(0.5)
A 		21
avr 15.6
(1.3) 		15.6
(1.3) 		13.7
(0.5) 		19.6
(3) 		5.7
(-3) 		7.2
(-2.4) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 0.5
(-3)
A 		3.1
(-0.4)
A 		2.3
(-1.2)
A 		6.4
(3)
A 		6
B 7.6
(2.3)
A 		8.5
(3)
A 		0.7
(-3)
A 		3.7
(-0.7)
A 		8
C 3.7
(-3)
A 		5.3
(-1.7)
A 		10.9
(3)
A 		10.1
(2.3)
A 		7
avr 3.9
(-3) 		5.6
(0.6) 		4.6
(-1.5) 		6.7
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.6
(-2.8)
A 		8.2
(1.2)
A 		3.4
(-1.7)
A 		11.1
(3)
A 		1.6
(-2.8)
A 		1.2
(-3)
A 		10
B 8.3
(3)
A 		1.7
(-2.1)
A 		0.6
(-3)
A 		2
(-1.9)
A 		4.1
(-0.3)
A 		0.9
(-2.8)
A 		8
C 5.3
(2.3)
A 		5.7
(2.8)
A 		5.9
(3)
A 		1.5
(-2)
A 		0.6
(-3)
A 		4.8
(1.8)
A 		5
avr 5.1
(2.8) 		5.2
(3) 		3.3
(-0.7) 		4.9
(2.4) 		2.1
(-3) 		2.3
(-2.6) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191152_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15589
Sequence Type Exemplar sequence
Representative Public ID K10C9.6 NCBI
Target Description K10C9.6 /REP_DB=WormBase Gene ID /WP=CE18047 /GEN=str-67 /TR=O61888 /GB=AAC17673.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070970(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070970 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-67) (str-67) mRNA, complete cds. 11/11 None
SNAP00000001031 ENSEMBL cdna:SNAP chromosome:CEL140:V:1062418:1065226:-1 10/11 None
K10C9.6 ENSEMBL cdna:known chromosome:CEL140:V:1062418:1064421:-1 gene:K10C9.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1062417-1064421(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-67
Ensembl K10C9.6
Entrez Gene 191984 Entrez gene
SwissProt O61888 EMBL-EBI
WormBase CE18047 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503371 Seven TM Receptor family member (str-67) [Caenorhabditis elegans] gb|AAC17673.1| Seven tm receptor protein 67 [Caenorhabditis elegans] 0.0
blast AAK68598 Seven tm receptor protein 69 [Caenorhabditis elegans] ref|NP_503850.1| Seven TM Receptor family member (str-69) [Caenorhabditis elegans] 2.0E-97
blast AAC69346 Seven tm receptor protein 68 [Caenorhabditis elegans] ref|NP_503851.1| Seven TM Receptor family member (str-68) [Caenorhabditis elegans] 2.0E-96
blast NP_503371 Seven TM Receptor family member (str-67) [Caenorhabditis elegans] gb|AAC17673.1| Seven tm receptor protein 67 [Caenorhabditis elegans] 2.0E-75
blast AAC69346 Seven tm receptor protein 68 [Caenorhabditis elegans] ref|NP_503851.1| Seven TM Receptor family member (str-68) [Caenorhabditis elegans] 8.0E-42
blast F88987 protein C50H11.16 [imported] - Caenorhabditis elegans 2.0E-40
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503371.1 6 13-31,89-111,131-153,196-218,238-260,289-311
K10C9.6 6 13-31,89-111,131-153,196-218,238-260,289-311
SNAP00000001031 2 59-81,105-127
Sequence
Target Sequence 
>C. ELEGANS:191152_AT
cgcattgtccctacactatttgtgtggttctgatgagttcacagattcttatataagaaa
agccatttttgaaaactacgcactggaagtatccgaactgccacgatatgcaatggtacc
atatgcagctgatggctcaattcgagcgaagggtataattttcttactcttcgcaattgt
tctcatcagtttttcatattgcattattatatttacatgtgttcaaatgcatcgaaatat
gaaaaaagagctgaagaaattctcaactcaaaatcaaaaacttgaatatcaatttttcct
tgctctcgttatgcaaactattggaccaactattttcttaataataccaactgggccgat
attgatgaccccattgattgcaccaattttcgaacttgaagtcaattggcaaactggtaa
cttgtactcacttgttggattcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCATTGTCCCTACACTATTTGTGT 33 255 444 Antisense
AAAACTACGCACTGGAAGTATCCGA 96 129 515 Antisense
GTATCCGAACTGCCACGATATGCAA 508 455 532 Antisense
GGTACCATATGCAGCTGATGGCTCA 408 503 558 Antisense
ATTTTCTTACTCTTCGCAATTGTTC 398 15 601 Antisense
GCAATTGTTCTCATCAGTTTTTCAT 50 323 616 Antisense
AATATCAATTTTTCCTTGCTCTCGT 638 173 728 Antisense
ACCAACTGGGCCGATATTGATGACC 253 85 789 Antisense
TTGATGACCCCATTGATTGCACCAA 530 705 805 Antisense
GATTGCACCAATTTTCGAACTTGAA 658 433 819 Antisense
ACTTGTACTCACTTGTTGGATTCTA 171 103 863 Antisense
Sequence Source Affymetrix Proprietary Database