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[191151_at] 7TM chemoreceptor, str family

Description B0213.7 /REP_DB=WormBase Gene ID /WP=CE16778 /GEN=str-83 /TR=O44661 /GB=AAC47941.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 73      4grp_total > 10      6grp_cgc > 90      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 13.2
(-2.4)
A 		43.6
(-0.2)
A 		5.5
(-3)
A 		88.6
(3)
A 		83
B 36.3
(0.6)
A 		25.6
(-0.8)
A 		8.8
(-3)
A 		54.8
(3)
A 		46
C 4.3
(-3)
A 		5.5
(-2.9)
A 		31.6
(-0.3)
A 		64.9
(3)
P 		61
avr 17.9
(-2.7) 		24.9
(-1.9) 		15.3
(-3) 		69.4
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 35.3
(2.6)
A 		12.9
(-3)
A 		25.7
(0.2)
A 		31.3
(1.6)
A 		36.9
(3)
A 		21.1
(-1)
A 		24
B 4.4
(-3)
A 		6.9
(-2.3)
A 		14.4
(-0.2)
A 		8.5
(-1.8)
A 		26.1
(3)
A 		4.3
(-3)
A 		22
C 28.4
(-0)
A 		7.6
(-3)
A 		49.6
(3)
A 		34.9
(0.9)
A 		14.6
(-2)
A 		36.1
(1.1)
A 		42
avr 22.7
(0.9) 		9.1
(-3) 		29.9
(3) 		24.9
(1.6) 		25.9
(1.8) 		20.5
(0.3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 4.8
(-1.2)
A 		9.5
(1.2)
A 		1.4
(-3)
A 		13
(3)
A 		12
B 11.6
(2.9)
A 		6.3
(-0.3)
A 		2
(-3)
A 		11.7
(3)
A 		10
C 1.4
(-3)
A 		1.6
(-2.9)
A 		11
(3)
A 		10.9
(2.9)
P 		10
avr 5.9
(-2.1) 		5.8
(-2.2) 		4.8
(-3) 		11.9
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 6.5
(-1.2)
A 		4.6
(-3)
A 		5.6
(-2.1)
A 		7.9
(0)
A 		11.1
(3)
A 		5.1
(-2.5)
A 		7
B 1.5
(-3)
A 		2.3
(-2.5)
A 		3.5
(-1.7)
A 		2.3
(-2.5)
A 		10.6
(3)
A 		1.6
(-2.9)
A 		9
C 10.5
(1.8)
A 		2.3
(-3)
A 		12.6
(3)
A 		7
(-0.3)
A 		4.7
(-1.6)
A 		12.1
(2.7)
A 		10
avr 6.2
(0.3) 		3.1
(-3) 		7.2
(1.3) 		5.7
(-0.3) 		8.8
(3) 		6.3
(0.4) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191151_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15389
Sequence Type Exemplar sequence
Representative Public ID B0213.7 NCBI
Target Description B0213.7 /REP_DB=WormBase Gene ID /WP=CE16778 /GEN=str-83 /TR=O44661 /GB=AAC47941.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071705(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071705 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-83) (str-83) mRNA, complete cds. 11/11 None
SNAP00000025857 ENSEMBL cdna:SNAP chromosome:CEL140:V:3977077:3978624:1 11/11 None
GENEFINDER00000025872 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3977077:3978342:1 11/11 None
B0213.7 ENSEMBL cdna:known chromosome:CEL140:V:3977077:3978624:1 gene:B0213.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3977076-3978624(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-83
Ensembl B0213.7
Entrez Gene 191990 Entrez gene
SwissProt O44661 EMBL-EBI
WormBase CE16778 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC47941 Seven tm receptor protein 83 [Caenorhabditis elegans] ref|NP_504106.1| Seven TM Receptor family member (str-83) [Caenorhabditis elegans] 1.0E-171
blast AAC47941 Seven tm receptor protein 83 [Caenorhabditis elegans] ref|NP_504106.1| Seven TM Receptor family member (str-83) [Caenorhabditis elegans] 1.0E-161
blast AAC47941 Seven tm receptor protein 83 [Caenorhabditis elegans] ref|NP_504106.1| Seven TM Receptor family member (str-83) [Caenorhabditis elegans] 1.0E-143
blast AAC47933 Seven tm receptor protein 82 [Caenorhabditis elegans] ref|NP_504105.2| Seven TM Receptor family member (str-82) [Caenorhabditis elegans] 1.0E-130
blast AAC47933 Seven tm receptor protein 82 [Caenorhabditis elegans] ref|NP_504105.2| Seven TM Receptor family member (str-82) [Caenorhabditis elegans] 1.0E-126
blast CAE58181 Hypothetical protein CBG01273 [Caenorhabditis briggsae] 1.0E-115
blast CAE58181 Hypothetical protein CBG01273 [Caenorhabditis briggsae] 1.0E-111
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504106.1 7 10-29,50-69,89-111,132-154,202-224,251-273,288-307
B0213.7 7 10-29,50-69,89-111,132-154,202-224,251-273,288-307
SNAP00000025857 6 7-29,44-63,90-112,159-181,208-230,245-264
GENEFINDER00000025872 7 10-29,50-69,89-111,132-154,202-224,251-273,293-315
Sequence
Target Sequence 
>C. ELEGANS:191151_AT
tctgctactatactatttttcctgaactggtttctggttgcttggtttgtttacggaaat
tatggagtctacccaaaggaattggaagatgagatatttgaaagatttgataagaatatc
agtcaaattgcatttacactggtatcctatgctaatcttgatgacaagggtcaaattgag
ctgaattatctcaatattgcaatgattatttacttgattttctgtgcttcaatacccatg
attatttccctcgtttgcggaataaaaacgtggcttcaaattcgtagtgcaatcgacata
acagataaatctaaaactctccaaaaacaagaacgccagctattcacagctttactcatt
caattcataataccttttctcggtaacacggtcccaatgcttatactttttgcttgtcct
gcactgcacatttccacggagccctacacaaactatatcagcatgtctgtaccgttttat
cctatatttgacgcaattgcaactactttcatta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTGCTACTATACTATTTTTCCTGA 575 609 421 Antisense
GAACTGGTTTCTGGTTGCTTGGTTT 145 347 444 Antisense
ACACTGGTATCCTATGCTAATCTTG 560 109 556 Antisense
TGATTTTCTGTGCTTCAATACCCAT 366 563 635 Antisense
CAATACCCATGATTATTTCCCTCGT 131 181 650 Antisense
GAACGCCAGCTATTCACAGCTTTAC 215 347 751 Antisense
TCACAGCTTTACTCATTCAATTCAT 127 629 764 Antisense
AACACGGTCCCAATGCTTATACTTT 396 133 805 Antisense
TGCTTATACTTTTTGCTTGTCCTGC 41 579 818 Antisense
GGAGCCCTACACAAACTATATCAGC 32 523 858 Antisense
GACGCAATTGCAACTACTTTCATTA 553 379 910 Antisense
Sequence Source Affymetrix Proprietary Database