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[191150_at]

Description T11F9.2 /REP_DB=WormBase Gene ID /WP=CE06414 /TR=Q22395 /GB=CAA98527.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Human mRNA (KIAA0062) like
Cluster 6grp_high1_10_10 > 31      4grp_high_8_8 > 21      6grp_total > 56      4grp_total > 19      6grp_cgc > 18      6grp_high1_sub > 03      6grp_cgc_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 114.3
(-0.1)
P 		138.6
(1)
P 		50.1
(-3)
A 		181.7
(3)
P 		132
B 100.1
(-1.1)
P 		89.7
(-1.8)
P 		72.3
(-3)
P 		158.7
(3)
P 		86
C 89.9
(-3)
P 		121.4
(-1.1)
P 		132.5
(-0.5)
P 		191.3
(3)
P 		101
avr 101.4
(-1.9) 		116.6
(-0.9) 		85
(-3) 		177.2
(3) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 146
1 2 3 4 5 6 range
A 5.5
(-3)
A 		134.4
(3)
P 		27.1
(-2)
A 		73.6
(0.2)
P 		41
(-1.3)
A 		95.3
(1.2)
P 		129
B 48.8
(2)
A 		22.8
(-1.3)
A 		9
(-3)
A 		22.6
(-1.3)
A 		39.5
(0.8)
P 		56.6
(3)
P 		48
C 132.5
(2.2)
P 		22.5
(-2.5)
A 		151.6
(3)
P 		10.8
(-3)
A 		93.1
(0.5)
P 		71.1
(-0.4)
P 		141
avr 62.3
(1.1) 		59.9
(0.8) 		62.6
(1.2) 		35.7
(-3) 		57.9
(0.5) 		74.3
(3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 41.6
(3)
P 		30.1
(0.6)
P 		13.1
(-3)
A 		26.6
(-0.2)
P 		29
B 31.9
(2.3)
P 		22.2
(-1.1)
P 		16.8
(-3)
P 		33.8
(3)
P 		17
C 29.8
(-3)
P 		34.9
(-1.1)
P 		46.2
(3)
P 		32.3
(-2.1)
P 		16
avr 34.4
(3) 		29.1
(-0.5) 		25.4
(-3) 		30.9
(0.7) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 1
(-3)
A 		47.8
(3)
P 		5.9
(-2.4)
A 		18.7
(-0.7)
P 		12.4
(-1.5)
A 		23.2
(-0.2)
P 		47
B 17
(1.7)
A 		7.6
(-1.3)
A 		2.2
(-3)
A 		6
(-1.8)
A 		16.1
(1.4)
P 		21.1
(3)
P 		19
C 49.1
(3)
P 		6.9
(-2.4)
A 		38.6
(1.7)
P 		2.2
(-3)
A 		30.1
(0.6)
P 		23.8
(-0.2)
P 		47
avr 22.4
(2.9) 		20.8
(2.2) 		15.6
(-0.1) 		9
(-3) 		19.5
(1.6) 		22.7
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191150_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12909
Sequence Type Exemplar sequence
Representative Public ID T11F9.2 NCBI
Target Description T11F9.2 /REP_DB=WormBase Gene ID /WP=CE06414 /TR=Q22395 /GB=CAA98527.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Human mRNA (KIAA0062) like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073503(11), NM_182340(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073503 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-140) (tag-140) mRNA, complete cds. 11/11 None
NM_182340 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-140) (tag-140) mRNA, complete cds. 11/11 None
SNAP00000013917 ENSEMBL cdna:SNAP chromosome:CEL140:V:11467573:11469321:1 11/11 None
GENEFINDER00000013937 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11462168:11469321:1 11/11 None
T11F9.2a ENSEMBL cdna:known chromosome:CEL140:V:11465601:11469483:1 gene:T11F9.2 11/11 None
T11F9.2b ENSEMBL cdna:known chromosome:CEL140:V:11465922:11469469:1 gene:T11F9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11466310-11469321(+) 100.0 100.0
Public Domain and Genome References
Ensembl T11F9.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD54157 Hypothetical protein T11F9.2a [Caenorhabditis elegans] ref|NP_505904.2| Temporarily Assigned Gene name family member (tag-140) [Caenorhabditis elegans] 0.0
blast CAA98527 Hypothetical protein T11F9.2b [Caenorhabditis elegans] ref|NP_872140.1| Temporarily Assigned Gene name family member (tag-140) [Caenorhabditis elegans] 0.0
blast CAE75250 Hypothetical protein CBG23208 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003689 EMBL-EBI Zinc transporter ZIP 1.7E-30
Pfam IPR003689 EMBL-EBI Zinc transporter ZIP 1.7E-30
Pfam IPR003689 EMBL-EBI Zinc transporter ZIP 2.0E-14
Pfam IPR003689 EMBL-EBI Zinc transporter ZIP 1.7E-30
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505904.2 6 43-65,78-100,115-137,410-429,439-461,474-496
NP_872140.1 6 50-72,85-107,122-144,417-436,446-468,481-503
T11F9.2a 6 43-65,78-100,115-137,410-429,439-461,474-496
T11F9.2b 6 50-72,85-107,122-144,417-436,446-468,481-503
SNAP00000013917 4 5-27,301-320,330-352,365-387
GENEFINDER00000013937 12 36-58,70-92,107-129,156-178,214-236,265-287,302-324,497-519,534-556,829-848,858-880,893-915
Sequence
Target Sequence 
>C. ELEGANS:191150_AT
gaagtagcttcagtcgcctatatgattatttttggatcatcagctaacaactttgtggat
ggtatgagcatgggagccgcattttcagacaatttgctcaggggtctgagtattggaatt
gctgtaatctcccaacagtttcctcaagaacttggaactttggcaattcttgtaaagtct
ggattaggactcaaaaagacacttttgttcaatatggttccaattgtactcagtttcttg
ggattttcgattggtgtgatgttggacagtgtggacgattcgtatgacgagtacattttt
gcaatatcttccggaatgtatatgtatatcttcttgggaaccttgattcctgaaattcga
gaatcgacgaatgagctcatcaaagaaaatttggccgagagtattctggtgtctattctc
caggcttgtggtatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTAGCTTCAGTCGCCTATATGA 323 337 1282 Antisense
GTATGAGCATGGGAGCCGCATTTTC 368 455 1343 Antisense
AGCCGCATTTTCAGACAATTTGCTC 568 83 1356 Antisense
CTGTAATCTCCCAACAGTTTCCTCA 499 239 1403 Antisense
GACACTTTTGTTCAATATGGTTCCA 671 359 1479 Antisense
ATGGTTCCAATTGTACTCAGTTTCT 641 49 1495 Antisense
GTACTCAGTTTCTTGGGATTTTCGA 291 459 1507 Antisense
GTTGGACAGTGTGGACGATTCGTAT 710 433 1542 Antisense
GTATATCTTCTTGGGAACCTTGATT 202 453 1605 Antisense
TTGGCCGAGAGTATTCTGGTGTCTA 48 703 1672 Antisense
GTCTATTCTCCAGGCTTGTGGTATT 678 467 1692 Antisense
Sequence Source Affymetrix Proprietary Database