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[191149_at] 7TM chemoreceptor, srj family

Description T03D3.6 /REP_DB=WormBase Gene ID /WP=CE13078 /GEN=srj-45 /TR=O16982 /GB=AAG24192.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 03      4grp_total > 04      6grp_cgc > 40      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 12.9
(-2.6)
A 		6.2
(-3)
A 		10.8
(-2.8)
A 		120.1
(3)
A 		114
B 56.5
(3)
A 		12.1
(-3)
A 		15
(-2.6)
A 		41.6
(1)
A 		44
C 34.7
(-1.2)
A 		22.1
(-1.9)
A 		4.6
(-3)
A 		103.3
(3)
A 		99
avr 34.7
(-1.1) 		13.5
(-2.7) 		10.1
(-3) 		88.3
(3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 10.9
(-2.1)
A 		2.6
(-3)
A 		24
(-0.8)
A 		60.9
(3)
A 		14.2
(-1.8)
A 		8.7
(-2.4)
A 		58
B 30.9
(3)
A 		27.2
(2.1)
A 		5.4
(-3)
A 		29.3
(2.6)
A 		27.7
(2.2)
A 		8.2
(-2.3)
A 		26
C 18.2
(-1.6)
A 		64.1
(3)
A 		13.2
(-2.2)
A 		13.9
(-2.1)
A 		6.6
(-2.8)
A 		4.8
(-3)
A 		59
avr 20
(-0.2) 		31.3
(2.3) 		14.2
(-1.5) 		34.7
(3) 		16.2
(-1) 		7.2
(-3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 4.7
(-1.7)
A 		1.3
(-3)
A 		2.8
(-2.4)
A 		17.6
(3)
A 		16
B 18
(3)
A 		3
(-3)
A 		3.5
(-2.8)
A 		8.9
(-0.6)
A 		15
C 11.5
(0.8)
A 		6.3
(-1.2)
A 		1.6
(-3)
A 		17.4
(3)
A 		16
avr 11.4
(1.4) 		3.5
(-2.6) 		2.6
(-3) 		14.6
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 2
(-2.5)
A 		0.9
(-3)
A 		5.2
(-1.2)
A 		15.5
(3)
A 		4.3
(-1.6)
A 		2.1
(-2.5)
A 		15
B 10.8
(2.8)
A 		9.1
(1.7)
A 		1.3
(-3)
A 		7.8
(0.9)
A 		11.2
(3)
A 		3.1
(-1.9)
A 		10
C 6.7
(-1.3)
A 		19.6
(3)
A 		3.4
(-2.4)
A 		2.8
(-2.6)
A 		2.1
(-2.8)
A 		1.6
(-3)
A 		18
avr 6.5
(0.3) 		9.9
(3) 		3.3
(-2.2) 		8.7
(2.1) 		5.9
(-0.2) 		2.3
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191149_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15123
Sequence Type Exemplar sequence
Representative Public ID T03D3.6 NCBI
Target Description T03D3.6 /REP_DB=WormBase Gene ID /WP=CE13078 /GEN=srj-45 /TR=O16982 /GB=AAG24192.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071367(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071367 NCBI Caenorhabditis elegans Serpentine Receptor, class J family member (srj-45) (srj-45) mRNA, complete cds. 11/11 None
GENEFINDER00000008143 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2835440:2845698:-1 9/11 None
T03D3.6 ENSEMBL cdna:known chromosome:CEL140:V:2835238:2836428:-1 gene:T03D3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2835237-2836428(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srj family
Gene Symbol srj-45
Ensembl T03D3.6
Entrez Gene 191949 Entrez gene
SwissProt O16982 EMBL-EBI
WormBase CE13078 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503768 Serpentine Receptor, class J family member (srj-45) [Caenorhabditis elegans] gb|AAG24192.1| Serpentine receptor, class j protein 45 [Caenorhabditis elegans] 0.0
blast T32211 hypothetical protein T03D3.7 - Caenorhabditis elegans 1.0E-160
blast NP_503768 Serpentine Receptor, class J family member (srj-45) [Caenorhabditis elegans] gb|AAG24192.1| Serpentine receptor, class j protein 45 [Caenorhabditis elegans] 1.0E-159
blast T32214 hypothetical protein T03D3.10 - Caenorhabditis elegans 1.0E-146
blast NP_503769 Serpentine Receptor, class J family member (srj-44) [Caenorhabditis elegans] gb|AAG24193.1| Serpentine receptor, class j protein 44 [Caenorhabditis elegans] 1.0E-140
blast T32211 hypothetical protein T03D3.7 - Caenorhabditis elegans 1.0E-138
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 4.5E-7
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 8.0E-8
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 5.2E-8
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.2E-5
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 9.1E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503768.1 7 10-30,43-65,91-113,126-148,196-218,251-273,288-310
T03D3.6 7 10-30,43-65,91-113,126-148,196-218,251-273,288-310
GENEFINDER00000008143 30 10-30,43-65,129-148,193-215,230-252,289-305,320-342,354-376,423-445,473-495,510-532,602-621,631-650,704-726,755-777,789-811,849-871,908-927,937-959,1006-1028,1054-1076,1089-1111,1193-1215,1228-1250,1352-1374,1386-1408,1434-1456,1469-1491,1539-1561,1591-1613
Sequence
Target Sequence 
>C. ELEGANS:191149_AT
tgactggatcctttctgttgtctgttgtatatttttctctgtggcacgttacgtgttact
tcccaggtcgagcgaactttgaacttctccaatatattcgtgaggattttcaagaaacat
ttggtttagattcgacagagtttaatatggttggagcattgttcagcgtaggatcttacg
aaacaacacatagggcgtggatcgccactataagttggtcagcagtttccatcgcatcta
tcacatcattttttgtgatggctcgattgataatgcgaaagctcaaaaaaatgacagtga
gaacaagccaaaaaacatcaagatttcaatttgagctcctcagagccctaattgtacaaa
cagtcatcccaatctgcatcagtttttcgccctgcctgttgtgttggtatggcccaattt
ttggtatacagctggacagatctttcaattattttgaaacaaccgctttaggggtatttt
cctttgtggaccccattgctatcattctgtgtcttcccatatttcgctgcagaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGACTGGATCCTTTCTGTTGTCTGT 449 571 404 Antisense
GTATATTTTTCTCTGTGGCACGTTA 618 453 430 Antisense
TGGCACGTTACGTGTTACTTCCCAG 266 545 445 Antisense
TCGAGCGAACTTTGAACTTCTCCAA 304 603 471 Antisense
GGAGCATTGTTCAGCGTAGGATCTT 199 521 556 Antisense
CCATCGCATCTATCACATCATTTTT 447 271 632 Antisense
CTCCTCAGAGCCCTAATTGTACAAA 630 233 739 Antisense
CCAATCTGCATCAGTTTTTCGCCCT 142 277 772 Antisense
GCCCTGCCTGTTGTGTTGGTATGGC 691 285 792 Antisense
GACCCCATTGCTATCATTCTGTGTC 63 383 892 Antisense
TCTTCCCATATTTCGCTGCAGAATT 81 619 915 Antisense
Sequence Source Affymetrix Proprietary Database