[Home] | [Total List]

[191148_s_at] 7TM chemoreceptor, srd family /// 7TM chemoreceptor, srd family

Description C13B7.3 /REP_DB=WormBase Gene ID /WP=CE24800 /GEN=srd-60 /TR=Q9UAU5 /GB=AAK68174.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 21      4grp_total > 26      6grp_cgc > 62      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 6.3
(-3)
A 		30.5
(3)
A 		14.1
(-1.1)
A 		16.2
(-0.5)
A 		24
B 6.2
(-3)
A 		58.6
(3)
A 		6.1
(-3)
A 		40.3
(0.9)
A 		53
C 9.7
(-2.7)
A 		5.8
(-3)
A 		23.3
(-1.5)
A 		76.6
(3)
A 		71
avr 7.4
(-3) 		31.6
(0.9) 		14.5
(-1.8) 		44.4
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 14.1
(0.1)
A 		8.2
(-1.8)
A 		23.4
(3)
A 		4.6
(-2.9)
A 		4.4
(-3)
A 		7.1
(-2.1)
A 		19
B 6.9
(-2)
A 		23.7
(3)
A 		12.7
(-0.3)
A 		22.9
(2.8)
A 		9.1
(-1.3)
A 		3.4
(-3)
A 		20
C 12.8
(0.7)
A 		17.6
(2.5)
A 		3.7
(-2.6)
A 		11
(0.1)
A 		19.1
(3)
A 		2.5
(-3)
A 		17
avr 11.3
(0.4) 		16.5
(3) 		13.3
(1.4) 		12.8
(1.2) 		10.9
(0.2) 		4.3
(-3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.3
(-3)
A 		6.6
(3)
A 		3.7
(-1)
A 		2.4
(-2.9)
A 		4
B 2
(-2.7)
A 		14.5
(3)
A 		1.4
(-3)
A 		8.6
(0.3)
A 		13
C 3.2
(-2.2)
A 		1.7
(-3)
A 		8.1
(0.4)
A 		12.9
(3)
A 		11
avr 2.5
(-3) 		7.6
(2.6) 		4.4
(-0.9) 		8
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 2.6
(-0.8)
A 		2.9
(-0.4)
A 		5.1
(3)
A 		1.2
(-3)
A 		1.3
(-2.8)
A 		1.7
(-2.2)
A 		4
B 2.4
(-2)
A 		7.9
(3)
A 		3.1
(-1.4)
A 		6.1
(1.4)
A 		3.7
(-0.8)
A 		1.3
(-3)
A 		7
C 4.7
(1.3)
A 		5.4
(2.1)
A 		0.9
(-2.9)
A 		2.2
(-1.4)
A 		6.2
(3)
A 		0.8
(-3)
A 		5
avr 3.2
(-0.2) 		5.4
(3) 		3
(-0.5) 		3.2
(-0.2) 		3.7
(0.5) 		1.3
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191148_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15791
Sequence Type Exemplar sequence
Representative Public ID C13B7.3 NCBI
Target Description C13B7.3 /REP_DB=WormBase Gene ID /WP=CE24800 /GEN=srd-60 /TR=Q9UAU5 /GB=AAK68174.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071290(11), NM_071262(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071290 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-73) (srd-73) mRNA, complete cds. 11/11 A 
NM_071262 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-60) (srd-60) mRNA, complete cds. 11/11 None
GENEFINDER00000022921 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2418909:2421411:1 11/11 None
GENEFINDER00000043333 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2527188:2529690:1 11/11 None
C13B7.3 ENSEMBL cdna:known chromosome:CEL140:V:2418909:2421411:1 gene:C13B7.3 11/11 None
Y45G12C.7 ENSEMBL cdna:known chromosome:CEL140:V:2527188:2529690:1 gene:Y45G12C.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2418908-2421411(+) 100.0 100.0
chrV:2527187-2529690(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srd family
7TM chemoreceptor, srd family
Gene Symbol srd-60
srd-73
Ensembl C13B7.3
Y45G12C.7
Entrez Gene 178724 Entrez gene
191821 Entrez gene
SwissProt Q9UAU5 EMBL-EBI
WormBase CE24800 Wormbase
CE24800 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68174 Serpentine receptor, class d (delta) protein 60 [Caenorhabditis elegans] ref|NP_503663.1| Serpentine Receptor, class D (delta) family member (srd-60) [Caenorhabditis elegans] ref|NP_503691.2| Serpentine Receptor, class D (delta) family member (srd-73) [Caenorhabditis elegans] gb|AAF60583.2| Hypothetical protein Y45G12C.7 [Caenorhabditis elegans] 0.0
blast CAE58048 Hypothetical protein CBG01125 [Caenorhabditis briggsae] 4.0E-83
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503691.2 7 10-32,45-67,87-109,129-151,185-207,233-255,270-292
NP_503663.1 7 10-32,45-67,87-109,129-151,185-207,233-255,270-292
C13B7.3 7 10-32,45-67,87-109,129-151,185-207,233-255,270-292
Y45G12C.7 7 10-32,45-67,87-109,129-151,185-207,233-255,270-292
GENEFINDER00000022921 7 10-32,45-67,87-109,129-151,185-207,233-255,270-292
GENEFINDER00000043333 7 10-32,45-67,87-109,129-151,185-207,233-255,270-292
Sequence
Target Sequence 
>C. ELEGANS:191148_S_AT
gactctggtatttgttccctattgcgattattgtcctctcctacattcccccaatcgacc
tggactctgtgtacctcgagacattacaagctcacccggactataattttgagccctata
gaaaattcggcggatttgcgaattctcacagtattttcatgacgctcgtcacttttacac
tggttctgctgaccattgtcgcgccgacgcttggctattcttggagacggcaaacgctaa
aagttttggaccggaatataaattcgctttccgcacaaagtgtgacacagttcagagcac
tggtccatggcctcggactgcaaattatgctcccgctgttttgttatgttcctgttgggt
ttttctacattttcaataaatatgttggaactcaaattctcatctcccaatacactgtat
gctttatgataactttaccagccctattcgacccgattctacaaatttattttatagtcc
catatcgcagagccgccaagcgaattctgacct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTCTGGTATTTGTTCCCTATTGC 400 373 410 Antisense
TCCCTATTGCGATTATTGTCCTCTC 88 599 425 Antisense
CCAATCGACCTGGACTCTGTGTACC 386 277 460 Antisense
TTACAAGCTCACCCGGACTATAATT 247 681 493 Antisense
CACAGTATTTTCATGACGCTCGTCA 657 195 556 Antisense
GTCACTTTTACACTGGTTCTGCTGA 4 465 577 Antisense
GCCGACGCTTGGCTATTCTTGGAGA 448 285 612 Antisense
TCGGACTGCAAATTATGCTCCCGCT 666 605 722 Antisense
CGCTGTTTTGTTATGTTCCTGTTGG 434 251 743 Antisense
GGAACTCAAATTCTCATCTCCCAAT 636 529 796 Antisense
AGAGCCGCCAAGCGAATTCTGACCT 107 69 898 Antisense
Sequence Source Affymetrix Proprietary Database