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[191147_at] GATA transcription factor

Description C18G1.2 /REP_DB=WormBase Gene ID /WP=CE17418 /TR=O61924 /GB=AAC17756.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=GATA transcription factor
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 82      4grp_highest_8_8 > 11      4grp_high_8_8 > 47      6grp_highest_nonorm > 72      6grp_total > 74      4grp_total > 48      6grp_highest_sub > 04      6grp_high1_sub > 04      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 427
1 2 3 4 range
A 321.6
(-3)
P 		542.5
(0.1)
P 		749
(3)
P 		445.8
(-1.3)
P 		427
B 485.8
(-3)
P 		535.9
(-0.2)
P 		592.4
(3)
P 		522.6
(-0.9)
P 		107
C 401.6
(-3)
P 		619.3
(3)
P 		578.3
(1.9)
P 		467
(-1.2)
P 		218
avr 403
(-3) 		565.9
(1.1) 		639.9
(3) 		478.5
(-1.1) 		237

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 282
1 2 3 4 5 6 range
A 348.2
(-2.6)
P 		336.2
(-3)
P 		407.4
(-0.5)
P 		505.5
(3)
P 		491
(2.5)
P 		409.3
(-0.4)
P 		169
B 321
(-3)
P 		359.6
(-1)
P 		384.8
(0.3)
P 		385.2
(0.3)
P 		436.6
(3)
P 		339.7
(-2)
P 		116
C 343.9
(-2)
P 		322.6
(-2.4)
P 		382.9
(-1.2)
P 		578.3
(3)
P 		296.3
(-3)
P 		430.1
(-0.2)
P 		282
avr 337.7
(-3) 		339.5
(-2.9) 		391.7
(-0.9) 		489.7
(3) 		408
(-0.2) 		393
(-0.8) 		152
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 117.1
(-0.6)
P 		117.8
(-0.6)
P 		195.8
(3)
P 		65.2
(-3)
P 		131
B 154.9
(3)
P 		132.4
(-0.1)
P 		137.3
(0.6)
P 		111.4
(-3)
P 		44
C 132.9
(-0.4)
P 		178.1
(1.9)
P 		201.6
(3)
P 		78.7
(-3)
P 		123
avr 135
(0.2) 		142.8
(0.7) 		178.2
(3) 		85.1
(-3) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 64.2
(-3)
P 		119.6
(1)
P 		88.7
(-1.2)
P 		128.2
(1.6)
P 		148.1
(3)
P 		99.7
(-0.5)
P 		84
B 111.7
(-1.7)
P 		119.7
(-1.1)
P 		93.5
(-3)
P 		102
(-2.4)
P 		177.4
(3)
P 		126.7
(-0.6)
P 		84
C 127.5
(0.9)
P 		98.4
(-2.7)
P 		97.4
(-2.8)
P 		116.3
(-0.5)
P 		95.9
(-3)
P 		144
(3)
P 		48
avr 101.1
(-2) 		112.6
(-0.5) 		93.2
(-3) 		115.5
(-0.2) 		140.5
(3) 		123.5
(0.8) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191147_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15069
Sequence Type Exemplar sequence
Representative Public ID C18G1.2 NCBI
Target Description C18G1.2 /REP_DB=WormBase Gene ID /WP=CE17418 /TR=O61924 /GB=AAC17756.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=GATA transcription factor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071882(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071882 NCBI Caenorhabditis elegans C18G1.2 (C18G1.2) mRNA, complete cds. 11/11 None
SNAP00000018231 ENSEMBL cdna:SNAP chromosome:CEL140:V:4770528:4772700:1 11/11 None
GENEFINDER00000018238 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4770528:4772700:1 11/11 None
C18G1.2 ENSEMBL cdna:known chromosome:CEL140:V:4770528:4772904:1 gene:C18G1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4770527-4772700(+) 100.0 100.0
Public Domain and Genome References
Gene Title GATA transcription factor
Ensembl C18G1.2
Entrez Gene 178868 Entrez gene
SwissProt O61924 EMBL-EBI
WormBase CE17418 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC17756 Hypothetical protein C18G1.2 [Caenorhabditis elegans] ref|NP_504283.1| C18G1.2 [Caenorhabditis elegans] 3.0E-94
blast CAE66175 Hypothetical protein CBG11413 [Caenorhabditis briggsae] 1.0E-10
blast CAA93510 Hypothetical protein K02B9.4 [Caenorhabditis elegans] ref|NP_510321.1| Erythroid-Like Transcription factor family member (elt-3) [Caenorhabditis elegans] gb|AAD33964.1| GATA transcription factor ELT-3 [Caenorhabditis elegans] 4.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR000679 EMBL-EBI Zn-finger, GATA type 1.1E-18
Sequence
Target Sequence 
>C. ELEGANS:191147_AT
gctccctgaaactactactcttcaaccacttccatctgttacgactatcatgaatgagcc
gccagcgagaagtccaatggaggactattatttatttaatcaatttcaatataatcaaaa
tccatatgtctacccaccgcagcccgtgtactacaatacttggcaagatgcttcaactca
tcactttgatccattccagagttatcaaattccatctccatacgaacaaccaattcagtc
gtcaatgtgtactactccattacaaccacttgaagattccagaattatttttgatgaaag
cttgacgaaaaatgaaaatgagcaaaaatcctttgtggagcaagatagcagttacgaatc
atctggaaaccgatttggttcacagaagggaaagaaaattgcaaaagtaattcgtgatgc
gtgctgctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCCCTGAAACTACTACTCTTCAA 370 299 15 Antisense
CCACTTCCATCTGTTACGACTATCA 541 275 40 Antisense
GACTATCATGAATGAGCCGCCAGCG 5 373 57 Antisense
GCCGCCAGCGAGAAGTCCAATGGAG 109 287 72 Antisense
ATCAAAATCCATATGTCTACCCACC 632 25 128 Antisense
CGCAGCCCGTGTACTACAATACTTG 293 255 152 Antisense
AACTCATCACTTTGATCCATTCCAG 567 139 189 Antisense
AAATTCCATCTCCATACGAACAACC 4 117 221 Antisense
TCAGTCGTCAATGTGTACTACTCCA 521 621 249 Antisense
TACTACTCCATTACAACCACTTGAA 647 645 264 Antisense
AGTAATTCGTGATGCGTGCTGCTCA 15 63 420 Antisense
Sequence Source Affymetrix Proprietary Database