[Home] | [Total List]

[191146_at]

Description F38B7.6 /REP_DB=WormBase Gene ID /WP=CE05830 /TR=Q20153 /GB=CAA98473.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster 6grp_total > 20      4grp_total > 19      6grp_cgc > 55      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 28.9
(-1.1)
A 		52.8
(1.5)
A 		11.7
(-3)
A 		66.8
(3)
A 		55
B 46.5
(0.2)
A 		37.4
(-2)
A 		33.2
(-3)
A 		58
(3)
A 		25
C 41.8
(-2.3)
A 		48.6
(-1.5)
A 		35.7
(-3)
A 		85.8
(3)
P 		50
avr 39.1
(-1.3) 		46.3
(-0.3) 		26.9
(-3) 		70.2
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 18.1
(-0.3)
A 		23.6
(0.9)
A 		23.1
(0.8)
A 		33.2
(3)
P 		6
(-3)
A 		30.4
(2.4)
A 		27
B 25.3
(-1.7)
A 		37.3
(1.4)
A 		35.4
(0.9)
A 		43.6
(3)
A 		41.9
(2.6)
A 		20.2
(-3)
A 		23
C 3.7
(-3)
A 		50.2
(2.2)
P 		57.9
(3)
A 		10.1
(-2.3)
A 		3.3
(-3)
A 		38.6
(0.9)
A 		55
avr 15.7
(-3) 		37
(2.5) 		38.8
(3) 		29
(0.5) 		17.1
(-2.6) 		29.7
(0.6) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 10.5
(2.3)
A 		11.5
(3)
A 		3.1
(-3)
A 		9.8
(1.8)
A 		8
B 14.8
(3)
A 		9.2
(-1.7)
A 		7.7
(-3)
A 		12.4
(1)
A 		7
C 13.8
(1)
A 		14
(1.6)
A 		12.4
(-3)
A 		14.5
(3)
P 		2
avr 13
(3) 		11.6
(1.4) 		7.7
(-3) 		12.2
(2.1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 3.3
(-1.6)
A 		8.4
(3)
A 		5
(-0.1)
A 		8.4
(3)
P 		1.8
(-3)
A 		7.4
(2.1)
A 		7
B 8.8
(-2.2)
A 		12.4
(0.1)
A 		8.6
(-2.3)
A 		11.6
(-0.4)
A 		17
(3)
A 		7.5
(-3)
A 		10
C 1.4
(-2.9)
A 		15.3
(3)
P 		14.7
(2.7)
A 		2
(-2.6)
A 		1.1
(-3)
A 		12.9
(2)
A 		14
avr 4.5
(-3) 		12
(3) 		9.4
(0.9) 		7.3
(-0.8) 		6.6
(-1.3) 		9.3
(0.8) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191146_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12726
Sequence Type Exemplar sequence
Representative Public ID F38B7.6 NCBI
Target Description F38B7.6 /REP_DB=WormBase Gene ID /WP=CE05830 /TR=Q20153 /GB=CAA98473.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F38B7.6 ENSEMBL cdna:pseudogene chromosome:CEL140:V:11560908:11562470:1 gene:F38B7.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000015630 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11560907-11561818(+) 100.0 100.0
Public Domain and Genome References
Ensembl F38B7.6
Sequence
Target Sequence 
>C. ELEGANS:191146_AT
atgtcacttctcaacgaatctagttataattttcgtgatccgtataaccttatcgctgca
ttatcaatgggaattgttgggctagctggaattacatgtaatatcatttttatctacgtc
ttttttaaaaatgtatccgagaagacttcatttaatgttttaggcattacaagagcattt
gcaaatctttttgttcttgtaattctttattactttgttttcattccaacaactgtttta
ggttacacacctttcttctcaacttatggtgtttcatttgtcctagcaattagcattgct
ctatacgcaacaaatgaaaatcaaactcttctgactgcaatcaatagattttgtgcacta
tactttccatttcaatattcaaagttttgtggtataaaacccactgtgtttttcatattt
ttaatcaatgcctaccgattcggcgaagttatagttccaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCACTTCTCAACGAATCTAGTT 16 49 13 Antisense
ATTTTCGTGATCCGTATAACCTTAT 581 13 41 Antisense
TAACCTTATCGCTGCATTATCAATG 233 639 57 Antisense
AATGGGAATTGTTGGGCTAGCTGGA 253 163 78 Antisense
TATCATTTTTATCTACGTCTTTTTT 401 659 114 Antisense
CACACCTTTCTTCTCAACTTATGGT 186 195 258 Antisense
ATGGTGTTTCATTTGTCCTAGCAAT 309 51 278 Antisense
AAATCAAACTCTTCTGACTGCAATC 165 117 330 Antisense
TGTGCACTATACTTTCCATTTCAAT 256 557 364 Antisense
TAATCAATGCCTACCGATTCGGCGA 502 635 434 Antisense
GATTCGGCGAAGTTATAGTTCCAAT 215 433 449 Antisense
Sequence Source Affymetrix Proprietary Database