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[191145_at] transcription factor AP-2

Description K06A1.1 /REP_DB=WormBase Gene ID /WP=CE02001 /TR=Q09585 /GB=AAC24296.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=transcription factor AP-2
Cluster 6grp_total > 06      4grp_total > 30      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 152.9
(3)
P 		54.7
(-2.3)
A 		41.4
(-3)
A 		111.9
(0.8)
A 		112
B 102.5
(3)
P 		48.1
(-1.6)
A 		31.9
(-3)
A 		85.9
(1.6)
A 		71
C 129.2
(3)
P 		66.1
(-0.2)
A 		10.6
(-3)
A 		100.9
(1.6)
A 		119
avr 128.2
(3) 		56.3
(-1.3) 		28
(-3) 		99.6
(1.3) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 162.7
(3)
P 		72.7
(-0.7)
A 		42
(-1.9)
A 		36.1
(-2.2)
A 		15.4
(-3)
A 		50.5
(-1.6)
A 		147
B 158.3
(3)
P 		74.7
(-0.4)
A 		83.1
(-0.1)
A 		22.4
(-2.6)
A 		41.9
(-1.8)
A 		12.6
(-3)
A 		146
C 110.1
(3)
M 		103
(2.6)
A 		74.6
(0.9)
A 		10
(-3)
A 		45.5
(-0.9)
A 		43.7
(-1)
A 		100
avr 143.7
(3) 		83.5
(0) 		66.6
(-0.8) 		22.8
(-3) 		34.3
(-2.4) 		35.6
(-2.4) 		121
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 55.7
(3)
P 		11.9
(-2.9)
A 		10.8
(-3)
A 		16.4
(-2.3)
A 		45
B 32.7
(3)
P 		11.9
(-1.9)
A 		7.4
(-3)
A 		18.3
(-0.4)
A 		25
C 42.8
(3)
P 		19
(-0.7)
A 		3.7
(-3)
A 		17
(-1)
A 		39
avr 43.7
(3) 		14.3
(-1.8) 		7.3
(-3) 		17.2
(-1.4) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 30
(3)
P 		25.9
(2)
A 		9.1
(-1.9)
A 		9.2
(-1.9)
A 		4.6
(-3)
A 		12.3
(-1.2)
A 		25
B 55.1
(3)
P 		24.9
(-0.6)
A 		20.2
(-1.2)
A 		5.9
(-2.9)
A 		17
(-1.5)
A 		4.7
(-3)
A 		50
C 40.8
(3)
M 		31.4
(1.5)
A 		19
(-0.4)
A 		2
(-3)
A 		14.7
(-1)
A 		14.6
(-1.1)
A 		39
avr 42
(3) 		27.4
(0.6) 		16.1
(-1.3) 		5.7
(-3) 		12.1
(-1.9) 		10.5
(-2.2) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191145_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4686
Sequence Type Exemplar sequence
Representative Public ID K06A1.1 NCBI
Target Description K06A1.1 /REP_DB=WormBase Gene ID /WP=CE02001 /TR=Q09585 /GB=AAC24296.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=transcription factor AP-2
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062899(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062899 NCBI Caenorhabditis elegans K06A1.1 (K06A1.1) mRNA, complete cds. 11/11 None
SNAP00000007667 ENSEMBL cdna:SNAP chromosome:CEL140:II:6454921:6457410:1 11/11 None
GENEFINDER00000007670 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6454921:6456387:1 11/11 None
K06A1.1 ENSEMBL cdna:known chromosome:CEL140:II:6454921:6456387:1 gene:K06A1.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6454917-6456384(+) 100.0 100.0
Public Domain and Genome References
Gene Title transcription factor AP-2
Ensembl K06A1.1
Entrez Gene 187043 Entrez gene
SwissProt Q09585 EMBL-EBI
WormBase CE35990 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.6245.1.S1_AT similar to transcription factor AP-2 epsilon (activating enhancer binding protein 2 epsilon) cfa
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC24296 Hypothetical protein K06A1.1 [Caenorhabditis elegans] ref|NP_495300.2| K06A1.1 [Caenorhabditis elegans] 0.0
blast CAE59320 Hypothetical protein CBG02662 [Caenorhabditis briggsae] 1.0E-176
blast CAE59320 Hypothetical protein CBG02662 [Caenorhabditis briggsae] 1.0E-168
blast EAA00423 ENSANGP00000019163 [Anopheles gambiae str. PEST] ref|XP_320880.2| ENSANGP00000019163 [Anopheles gambiae str. PEST] 6.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR004979 EMBL-EBI Transcription factor AP-2 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:191145_AT
gacgcacaagtctcttaagctctacaactaaatatcgggttactgtagcagaaatacaaa
gacgcatcagcccgccagaatgcttaaatgcgtctcttcttggtggtattttgagaaagg
ctaagtcaaaggacggtgggaaaacattgagggattctctcaagaaacttggtttgactc
ttcctgctggtagaaggaagcaagcaaatgttacagcttggacggctttagttgaagaag
aagcaattcacatggcaaaagagtttgctctcgtatgtgaaaaggaatttcattcccgag
aaattggaatctacttgacaaaaacctctctagcaatcgatccggacgttgtaaagcgga
gaactgcactggaaatgagcaggaaagttgttggagagctcgctgaacttctctcctgtg
accgtacacctcttactccatattttcctagaaatatgcttccgattgatccttctgtac
aacagcatttatcacattttacgctgatgactcatggtttcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGCACAAGTCTCTTAAGCTCTAC 691 379 536 Antisense
GAAATACAAAGACGCATCAGCCCGC 449 363 586 Antisense
CATCAGCCCGCCAGAATGCTTAAAT 504 213 600 Antisense
GCGTCTCTTCTTGGTGGTATTTTGA 678 289 625 Antisense
AGAAACTTGGTTTGACTCTTCCTGC 688 71 698 Antisense
GTTACAGCTTGGACGGCTTTAGTTG 182 447 745 Antisense
CTCTCTAGCAATCGATCCGGACGTT 170 231 861 Antisense
GGAGAGCTCGCTGAACTTCTCTCCT 275 519 928 Antisense
ACCTCTTACTCCATATTTTCCTAGA 581 85 963 Antisense
AATATGCTTCCGATTGATCCTTCTG 373 173 988 Antisense
TACGCTGATGACTCATGGTTTCGGA 416 647 1035 Antisense
Sequence Source Affymetrix Proprietary Database