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[191143_at] ATP synthase subunit g

Description K07A12.3 /REP_DB=WormBase Gene ID /WP=CE11868 /TR=SW:P90921 /GB=CAB03179.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=ATP synthase subunit g
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 61      4grp_highest_8_8 > 18      4grp_high_8_8 > 62      6grp_highest_nonorm > 37      6grp_total > 71      4grp_total > 58      6grp_highest_sub > 04      6grp_cgc > 74      6grp_high1_sub > 04      6grp_cgc_sub > 02_03_04_05      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4278
1 2 3 4 range
A 4543.4
(-0.6)
P 		5508.6
(0.7)
P 		7083.9
(3)
P 		2900
(-3)
P 		4184
B 4430.6
(-0.2)
P 		5481.8
(1.7)
P 		6242.3
(3)
P 		2805.8
(-3)
P 		3437
C 3974
(-1.6)
P 		5871
(2)
P 		6402.9
(3)
P 		3232.4
(-3)
P 		3171
avr 4316
(-0.8) 		5620.5
(1.4) 		6576.4
(3) 		2979.4
(-3) 		3597

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2191
1 2 3 4 5 6 range
A 4507.6
(-1)
P 		4629.4
(-0.6)
P 		5826.7
(3)
P 		5291.7
(1.4)
P 		4896.4
(0.2)
P 		3848.8
(-3)
P 		1978
B 4777.7
(-2.2)
P 		5464.6
(3)
P 		4728.4
(-2.5)
P 		5400.6
(2.5)
P 		4792.7
(-2.1)
P 		4667.5
(-3)
P 		797
C 3635.9
(-3)
P 		5476.7
(3)
P 		4631.3
(0.2)
P 		5483.5
(3)
P 		4382.1
(-0.6)
P 		4401.8
(-0.5)
P 		1848
avr 4307.1
(-3) 		5190.2
(1.9) 		5062.1
(1.2) 		5391.9
(3) 		4690.4
(-0.9) 		4306
(-3) 		1086
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1807
1 2 3 4 range
A 1654.2
(2.2)
P 		1195.8
(0.2)
P 		1851.9
(3)
P 		424.5
(-3)
P 		1427
B 1412.9
(2.8)
P 		1353.9
(2.3)
P 		1446.5
(3)
P 		597.9
(-3)
P 		849
C 1315.5
(-0.3)
P 		1688
(1.1)
P 		2231.6
(3)
P 		545
(-3)
P 		1687
avr 1460.9
(1.3) 		1412.6
(1) 		1843.3
(3) 		522.5
(-3) 		1321

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1116
1 2 3 4 5 6 range
A 830.9
(-3)
P 		1646.4
(3)
P 		1268.9
(0.2)
P 		1342.1
(0.8)
P 		1477.5
(1.8)
P 		937.1
(-2.2)
P 		816
B 1662.4
(0.9)
P 		1818.9
(2)
P 		1148.2
(-3)
P 		1430.4
(-0.9)
P 		1947.2
(3)
P 		1740.5
(1.4)
P 		799
C 1347.7
(-0.4)
P 		1671.1
(3)
P 		1178.7
(-2.2)
P 		1102.7
(-3)
P 		1418
(0.3)
P 		1473.6
(0.9)
P 		568
avr 1280.3
(-2) 		1712.1
(3) 		1198.6
(-3) 		1291.7
(-1.9) 		1614.2
(1.9) 		1383.7
(-0.8) 		514
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191143_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.338
Sequence Type Exemplar sequence
Representative Public ID K07A12.3 NCBI
Target Description K07A12.3 /REP_DB=WormBase Gene ID /WP=CE11868 /TR=SW:P90921 /GB=CAB03179.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=ATP synthase subunit g
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059951(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059951 NCBI Caenorhabditis elegans ATP Synthase G homolog family member (asg-1) (asg-1) mRNA, complete cds. 11/11 A 
SNAP00000033551 ENSEMBL cdna:SNAP chromosome:CEL140:I:8701073:8701515:1 11/11 None
GENEFINDER00000033553 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8701073:8701515:1 11/11 None
K07A12.3.2 ENSEMBL cdna:known chromosome:CEL140:I:8701069:8701590:1 gene:K07A12.3 11/11 None
K07A12.3.1 ENSEMBL cdna:known chromosome:CEL140:I:8701071:8701594:1 gene:K07A12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8701003-8701446(+) 100.0 100.0
Public Domain and Genome References
Gene Title ATP synthase subunit g
Gene Symbol asg-1
Ensembl K07A12.3
Entrez Gene 172673 Entrez gene
SwissProt P90921 EMBL-EBI
WormBase CE11868 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
15986 ATP synthesis coupled proton transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16469 proton-transporting two-sector ATPase complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
46933 hydrogen-transporting ATP synthase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
46961 hydrogen-transporting ATPase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03179 Hypothetical protein K07A12.3 [Caenorhabditis elegans] ref|NP_492352.1| ATP Synthase G homolog family member (asg-1) [Caenorhabditis elegans] sp|P90921|ATPO_CAEEL Probable ATP synthase G chain, mitochondrial 9.0E-69
blast CAE66949 Hypothetical protein CBG12341 [Caenorhabditis briggsae] 5.0E-61
Protein Domains
Database ID Description E-Value
Pfam IPR006808 EMBL-EBI Mitochondrial ATP synthase g subunit 2.4E-52
Sequence
Target Sequence 
>C. ELEGANS:191143_AT
cgacccacaagctgagcttcttcgaaaagttggccaacacctttggagctctttaccgtc
atcaagctcagcagttcccacgccgtctcgctattctcaaggctgttggaaagcacgagc
tggctccaccccggtctgctgacatcccagctatcaaggcggactgggctaagctccaga
agtttattgagaccaagcaatatgtcaaccttagtatcaaggaaagtctcgtctactcgg
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGACCCACAAGCTGAGCTTCTTCGA 521 249 17 Antisense
GAGCTTCTTCGAAAAGTTGGCCAAC 557 387 30 Antisense
AAGTTGGCCAACACCTTTGGAGCTC 197 155 43 Antisense
TTGGCCAACACCTTTGGAGCTCTTT 453 707 46 Antisense
TGGAGCTCTTTACCGTCATCAAGCT 467 547 60 Antisense
AGCTCTTTACCGTCATCAAGCTCAG 505 79 63 Antisense
TCTCGCTATTCTCAAGGCTGTTGGA 421 611 102 Antisense
GCTATTCTCAAGGCTGTTGGAAAGC 137 305 106 Antisense
GTTGGAAAGCACGAGCTGGCTCCAC 171 437 121 Antisense
GTATCAAGGAAAGTCTCGTCTACTC 623 453 230 Antisense
TCAAGGAAAGTCTCGTCTACTCGGC 105 633 233 Antisense
Sequence Source Affymetrix Proprietary Database