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[191142_s_at] RAD23 protein homolog2 like

Description ZK20.3 /REP_DB=WormBase Gene ID /WP=CE06606 /TR=Q23451 /GB=CAA93780.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=RAD23 protein homolog2 like
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 92      4grp_highest_8_8 > 18      4grp_high_8_8 > 63      6grp_highest_nonorm > 58      6grp_total > 94      4grp_total > 56      6grp_high1_sub > 04_05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1369
1 2 3 4 range
A 1990
(-1.4)
P 		1645.2
(-3)
P 		2915.7
(3)
P 		2004.7
(-1.3)
P 		1271
B 1607.2
(-3)
P 		2937.1
(3)
P 		2392.9
(0.5)
P 		2091.6
(-0.8)
P 		1330
C 2407.4
(0.7)
P 		2444.2
(0.9)
P 		2921.4
(3)
P 		1567.9
(-3)
P 		1354
avr 2001.5
(-2.2) 		2342.2
(0.2) 		2743.3
(3) 		1888.1
(-3) 		855

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1944
1 2 3 4 5 6 range
A 2055.5
(-3)
P 		2481.8
(-0.5)
P 		2817.8
(1.4)
P 		3092.5
(3)
P 		2918.5
(2)
P 		2333
(-1.4)
P 		1037
B 2967.5
(1.3)
P 		2285.2
(-0.8)
P 		1561
(-3)
P 		2626.4
(0.3)
P 		3505.3
(3)
P 		3010.5
(1.5)
P 		1944
C 2574.6
(-1.9)
P 		2373.2
(-3)
P 		2919.6
(0)
P 		3156.3
(1.3)
P 		3454.3
(3)
P 		3373.8
(2.6)
P 		1081
avr 2532.5
(-2) 		2380.1
(-3) 		2432.8
(-2.7) 		2958.4
(0.8) 		3292.7
(3) 		2905.8
(0.5) 		913
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 754
1 2 3 4 range
A 724.6
(2.5)
P 		357.1
(-2.2)
P 		762.2
(3)
P 		293.5
(-3)
P 		469
B 512.5
(-1.6)
P 		725.4
(3)
P 		554.5
(-0.7)
P 		445.7
(-3)
P 		280
C 796.9
(1.2)
P 		702.7
(0.5)
P 		1018.2
(3)
P 		264.4
(-3)
P 		754
avr 678
(1.6) 		595.1
(0.5) 		778.3
(3) 		334.5
(-3) 		444

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1045
1 2 3 4 5 6 range
A 378.9
(-3)
P 		882.6
(3)
P 		613.7
(-0.2)
P 		784.3
(1.8)
P 		880.7
(3)
P 		568
(-0.7)
P 		504
B 1032.6
(0.8)
P 		760.6
(-0.8)
P 		379.1
(-3)
P 		695.6
(-1.2)
P 		1424.2
(3)
P 		1122.6
(1.3)
P 		1045
C 954.3
(0.9)
P 		724.1
(-1.9)
P 		743.1
(-1.7)
P 		634.7
(-3)
P 		1117.8
(2.9)
P 		1129.4
(3)
P 		495
avr 788.6
(-0.8) 		789.1
(-0.8) 		578.6
(-3) 		704.9
(-1.7) 		1140.9
(3) 		940
(0.9) 		562
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191142_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2992
Sequence Type Exemplar sequence
Representative Public ID ZK20.3 NCBI
Target Description ZK20.3 /REP_DB=WormBase Gene ID /WP=CE06606 /TR=Q23451 /GB=CAA93780.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=RAD23 protein homolog2 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064087(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064087 NCBI Caenorhabditis elegans ZK20.3 (ZK20.3) mRNA, complete cds. 11/11 None
SNAP00000019230 ENSEMBL cdna:SNAP chromosome:CEL140:II:11651513:11652633:-1 11/11 None
GENEFINDER00000019236 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11649104:11652633:-1 11/11 None
ZK20.3 ENSEMBL cdna:known chromosome:CEL140:II:11651173:11652900:-1 gene:ZK20.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11651509-11652897(-) 100.0 100.0
Public Domain and Genome References
Gene Title RAD23 protein homolog2 like
Ensembl ZK20.3
Entrez Gene 174785 Entrez gene
SwissProt Q23451 EMBL-EBI
WormBase CE06606 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:261352_AT DNA repair protein RAD23, putative at
CANINE_2:CFA.20584.1.S1_AT similar to UV excision repair protein RAD23 homolog A (hHR23A) cfa
CANINE_2:CFAAFFX.26140.1.S1_AT similar to UV excision repair protein RAD23 homolog A (hHR23A) cfa
CANINE_2:CFAAFFX.26145.1.S1_S_AT similar to UV excision repair protein RAD23 homolog A (hHR23A) cfa
HG-U133_PLUS_2:201046_S_AT RAD23 homolog A (S. cerevisiae) hs
HG-U133A:201046_S_AT RAD23 homolog A (S. cerevisiae) hs
HG-U133A_2:201046_S_AT RAD23 homolog A (S. cerevisiae) hs
HG-U95AV2:1753_S_AT RAD23 homolog A (S. cerevisiae) hs
HC-G110:1753_S_AT RAD23 homolog A (S. cerevisiae) hs
HG-U133_PLUS_2:201039_S_AT RAD23 homolog A (S. cerevisiae) hs
HG-U133A_2:201039_S_AT RAD23 homolog A (S. cerevisiae) hs
HG-FOCUS:201039_S_AT RAD23 homolog A (S. cerevisiae) hs
HG-U133A:201039_S_AT RAD23 homolog A (S. cerevisiae) hs
HG-U95AV2:41197_AT RAD23 homolog A (S. cerevisiae) hs
HUGENEFL:D21235_AT RAD23 homolog A (S. cerevisiae) hs
HUGENEFL:AD000092_CDS7_S_AT RAD23 homolog A (S. cerevisiae) hs
U133_X3P:G4826963_3P_A_AT RAD23 homolog A (S. cerevisiae) hs
U133_X3P:HS.180455.0.A1_3P_A_AT RAD23 homolog A (S. cerevisiae) hs
HG-U95C:55661_F_AT RAD23 homolog A (S. cerevisiae) hs
HG-U95B:43756_AT RAD23 homolog A (S. cerevisiae) hs
HU35KSUBB:RC_AA233276_AT RAD23 homolog A (S. cerevisiae) hs
MOUSE430_2:1453623_A_AT RAD23a homolog (S. cerevisiae) mm
MOE430A:1453623_A_AT RAD23a homolog (S. cerevisiae) mm
MOUSE430A_2:1453623_A_AT RAD23a homolog (S. cerevisiae) mm
MOUSE430A_2:1437697_AT RAD23a homolog (S. cerevisiae) mm
MOE430A:1437697_AT RAD23a homolog (S. cerevisiae) mm
MOUSE430_2:1437697_AT RAD23a homolog (S. cerevisiae) mm
MU11KSUBB:MSA.2960.0_AT RAD23a homolog (S. cerevisiae) mm
MG-U74AV2:92410_AT RAD23a homolog (S. cerevisiae) mm
MG-U74BV2:114347_AT RAD23a homolog (S. cerevisiae) mm
MOE430A:1422964_AT RAD23a homolog (S. cerevisiae) mm
MOUSE430A_2:1422964_AT RAD23a homolog (S. cerevisiae) mm
MOUSE430_2:1422964_AT RAD23a homolog (S. cerevisiae) mm
MOE430B:1455391_AT RAD23a homolog (S. cerevisiae) mm
MOUSE430_2:1455391_AT RAD23a homolog (S. cerevisiae) mm
MOE430B:1446783_AT RAD23a homolog (S. cerevisiae) (Rad23a), mRNA mm
MOUSE430_2:1446783_AT RAD23a homolog (S. cerevisiae) (Rad23a), mRNA mm
MU19KSUBB:TC28197_AT RAD23a homolog (S. cerevisiae) (Rad23a), mRNA mm
MU19KSUBB:TC33829_AT RAD23a homolog (S. cerevisiae) (Rad23a), mRNA mm
RG-U34A:RC_AA891828_AT RAD23a homolog (S. cerevisiae) (predicted) rn
RG-U34A:RC_AA891828_G_AT RAD23a homolog (S. cerevisiae) (predicted) rn
RG-U34B:RC_AA899561_F_AT RAD23a homolog (S. cerevisiae) (predicted) rn
RG-U34C:RC_AI102951_AT RAD23a homolog (S. cerevisiae) (predicted) rn
RG-U34C:RC_AI175101_AT RAD23a homolog (S. cerevisiae) (predicted) rn
RAE230A:1372630_AT RAD23a homolog (S. cerevisiae) (predicted) rn
RAT230_2:1372630_AT RAD23a homolog (S. cerevisiae) (predicted) rn
RAE230B:1397245_AT RAD23a homolog (S. cerevisiae) (predicted) rn
RAT230_2:1397245_AT RAD23a homolog (S. cerevisiae) (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6289 nucleotide-excision repair inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93780 Hypothetical protein ZK20.3 [Caenorhabditis elegans] ref|NP_496488.1| ZK20.3 [Caenorhabditis elegans] 1.0E-145
blast CAA93779 Hypothetical protein ZK20.4 [Caenorhabditis elegans] ref|NP_496487.1| ZK20.4 [Caenorhabditis elegans] 1.0E-136
blast CAE59460 Hypothetical protein CBG02840 [Caenorhabditis briggsae] 1.0E-126
blast CAA93780 Hypothetical protein ZK20.3 [Caenorhabditis elegans] ref|NP_496488.1| ZK20.3 [Caenorhabditis elegans] 1.0E-125
blast CAA93780 Hypothetical protein ZK20.3 [Caenorhabditis elegans] ref|NP_496488.1| ZK20.3 [Caenorhabditis elegans] 1.0E-123
blast XP_884697 PREDICTED: similar to UV excision repair protein RAD23 homolog A (hHR23A) isoform 3 [Bos taurus] 7.0E-30
blast XP_884697 PREDICTED: similar to UV excision repair protein RAD23 homolog A (hHR23A) isoform 3 [Bos taurus] 9.0E-30
blast XP_612101 PREDICTED: similar to UV excision repair protein RAD23 homolog A (hHR23A) isoform 1 [Bos taurus] 2.0E-29
Protein Domains
Database ID Description E-Value
Pfam IPR000626 EMBL-EBI Ubiquitin 4.3E-20
Pfam IPR000449 EMBL-EBI Ubiquitin-associated domain 6.8E-11
Pfam IPR000449 EMBL-EBI Ubiquitin-associated domain 3.7E-6
Pfam IPR000626 EMBL-EBI Ubiquitin 4.3E-20
Pfam IPR000449 EMBL-EBI Ubiquitin-associated domain 6.8E-11
Pfam IPR000449 EMBL-EBI Ubiquitin-associated domain 3.7E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496488.1 1 24-46
ZK20.3 1 24-46
Sequence
Target Sequence 
>C. ELEGANS:191142_S_AT
gaggcggaggcgcttacggatgagcaagaagagaacgttctcgcaatcactggaatgggc
tatgaccgtgaacaaactatcgctgctctgcgcgcagcattctggaatccagaccgcgca
gtcgagtttcttctcaacggacttcctgatgatgctgctgaccaagaaccagatttgggg
cccgagcaaaacatcgataacgtggatgaggatggcaatgacgatcttaacatgcttgca
aacatgccacagcttgcagaaattagagctttgattcaacaaaatcctgaaatgctcgcc
gcagtccttcagcagttggctgctgtcaacccaagacttgttcagactattcagaacaac
cagcaagctttcatggatcttttgaatggtggagctcaaggagccggagccgctgcagga
aatgcgccagaaagaaacaccccacgtcgccatgttatccatctcagtcccgaagaagct
gctgctattgagagaatcaaagccatagttgttaatgcaccagaagctgtggttgtggag
gcttatttcgcatgtgaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGCGGAGGCGCTTACGGATGAGC 627 405 520 Antisense
GAACGTTCTCGCAATCACTGGAATG 599 347 552 Antisense
GACCGTGAACAAACTATCGCTGCTC 342 383 583 Antisense
GCGCGCAGCATTCTGGAATCCAGAC 679 287 609 Antisense
GCAGTCGAGTTTCTTCTCAACGGAC 548 311 637 Antisense
ACAAAATCCTGAAATGCTCGCCGCA 656 111 798 Antisense
CGCAGTCCTTCAGCAGTTGGCTGCT 666 253 819 Antisense
GCTGCTGTCAACCCAAGACTTGTTC 323 297 838 Antisense
GCCGGAGCCGCTGCAGGAAATGCGC 288 283 922 Antisense
TATCCATCTCAGTCCCGAAGAAGCT 574 657 975 Antisense
GTGGAGGCTTATTTCGCATGTGACA 598 489 1054 Antisense
Sequence Source Affymetrix Proprietary Database