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[191140_at] 7TM chemoreceptor, sri family

Description D2062.8 /REP_DB=WormBase Gene ID /WP=CE25836 /GEN=sri-38 /TR=O16594 /GB=AAB66069.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 33      4grp_total > 20      6grp_cgc > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 7.8
(-2.2)
A 		2.3
(-3)
A 		6.8
(-2.4)
A 		44.1
(3)
A 		42
B 28.4
(0.9)
A 		42.9
(3)
A 		5.6
(-2.4)
A 		1.6
(-3)
A 		41
C 30.3
(-1)
A 		4.5
(-2.8)
A 		2.4
(-3)
A 		86.2
(3)
M 		84
avr 22.2
(-0.3) 		16.6
(-1.2) 		4.9
(-3) 		44
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 50.2
(3)
A 		12.8
(-1.9)
A 		28.9
(0.2)
A 		29.3
(0.3)
A 		4
(-3)
A 		10.5
(-2.2)
A 		46
B 38.6
(3)
A 		14.7
(-0.9)
A 		19.2
(-0.2)
A 		29.3
(1.5)
A 		11.5
(-1.5)
A 		2.1
(-3)
A 		37
C 20.7
(-1.1)
A 		45.7
(1.7)
A 		57.1
(3)
A 		8.5
(-2.4)
A 		3.4
(-3)
A 		22
(-0.9)
A 		54
avr 36.5
(3) 		24.4
(0.6) 		35.1
(2.7) 		22.4
(0.2) 		6.3
(-3) 		11.5
(-2) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 2.8
(-0.7)
A 		0.5
(-3)
A 		1.8
(-1.7)
A 		6.5
(3)
A 		6
B 9.1
(2.1)
A 		10.6
(3)
A 		1.3
(-2.4)
A 		0.3
(-3)
A 		10
C 10
(1)
A 		1.3
(-2.8)
A 		0.8
(-3)
A 		14.5
(3)
M 		14
avr 7.3
(3) 		4.1
(-0.2) 		1.3
(-3) 		7.1
(2.8) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 9.3
(3)
A 		4.6
(-0.5)
A 		6.3
(0.8)
A 		7.4
(1.6)
A 		1.2
(-3)
A 		2.6
(-2)
A 		8
B 13.4
(3)
A 		4.9
(-1)
A 		4.7
(-1.1)
A 		7.8
(0.3)
A 		4.7
(-1.1)
A 		0.8
(-3)
A 		13
C 7.7
(-0)
A 		13.9
(2.7)
A 		14.5
(3)
A 		1.7
(-2.7)
A 		1.1
(-3)
A 		7.4
(-0.2)
A 		13
avr 10.1
(3) 		7.8
(1.2) 		8.5
(1.8) 		5.6
(-0.5) 		2.3
(-3) 		3.6
(-2) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191140_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5570
Sequence Type Exemplar sequence
Representative Public ID D2062.8 NCBI
Target Description D2062.8 /REP_DB=WormBase Gene ID /WP=CE25836 /GEN=sri-38 /TR=O16594 /GB=AAB66069.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061904(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061904 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-38) (sri-38) mRNA, complete cds. 11/11 A 
GENEFINDER00000009064 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2610863:2614356:1 10/11 None
D2062.8 ENSEMBL cdna:known chromosome:CEL140:II:2610863:2612232:1 gene:D2062.8 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009046 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2610861-2612231(+) 96.41 100.0
chrII:2587503-2588688(+) 92.3 92.3
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-38
Ensembl D2062.8
Entrez Gene 191912 Entrez gene
SwissProt O16594 EMBL-EBI
WormBase CE25836 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_494305 Serpentine Receptor, class I family member (sri-38) [Caenorhabditis elegans] gb|AAB66069.2| Serpentine receptor, class i protein 38 [Caenorhabditis elegans] 1.0E-155
blast AAK72086 Serpentine receptor, class i protein 39 [Caenorhabditis elegans] ref|NP_494301.2| Serpentine Receptor, class I family member (sri-39) [Caenorhabditis elegans] 1.0E-148
blast NP_494305 Serpentine Receptor, class I family member (sri-38) [Caenorhabditis elegans] gb|AAB66069.2| Serpentine receptor, class i protein 38 [Caenorhabditis elegans] 1.0E-148
blast AAK72086 Serpentine receptor, class i protein 39 [Caenorhabditis elegans] ref|NP_494301.2| Serpentine Receptor, class I family member (sri-39) [Caenorhabditis elegans] 1.0E-144
blast T32832 hypothetical protein F33H12.2 - Caenorhabditis elegans 1.0E-113
blast T32832 hypothetical protein F33H12.2 - Caenorhabditis elegans 1.0E-112
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 3.5E-75
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494305.1 6 13-35,59-81,91-113,134-156,189-211,242-264
D2062.8 6 13-35,59-81,91-113,134-156,189-211,242-264
GENEFINDER00000009064 6 13-35,59-81,91-113,134-156,189-211,242-264
Sequence
Target Sequence 
>C. ELEGANS:191140_AT
ctccaagagtgtcaacgatgcggtcacctggtttatgccgttttttccggtttttgggta
cctcgcattttgcagtgctggaatgaagagagaagagcagatggattatgttaagctgca
ccatccagagtatgctctggaattttcaaatctcccaaattttgccatctatgagctgaa
cttctggctctaccttgtcatttgtttcggctcacttggagcaattttctgtggagctgt
attcacttttaccactgttgacatgttcaaaatgctgaaaagatcgcggcggaagatctc
ggtgtccaactttaaaaaacagcgatctacgatcaaaagcctcctggcacaatttgcggc
ttcatcccttcttcttattccgctcctttgcttttctctagttttattgctgaaattcga
tggatcccaggaaattagtaatataattttaacggttttctcgacaagatcttcggttaa
tgcagcggtcctgattgcaactacacctccgttcaggaactttgttttgagcggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCAAGAGTGTCAACGATGCGGTC 325 235 396 Antisense
TTTTGGGTACCTCGCATTTTGCAGT 379 673 447 Antisense
GATTATGTTAAGCTGCACCATCCAG 399 429 499 Antisense
AGCTGCACCATCCAGAGTATGCTCT 404 81 509 Antisense
TGCTCTGGAATTTTCAAATCTCCCA 370 581 528 Antisense
AAATCTCCCAAATTTTGCCATCTAT 32 119 543 Antisense
GATCGCGGCGGAAGATCTCGGTGTC 281 417 677 Antisense
TTAACGGTTTTCTCGACAAGATCTT 137 681 844 Antisense
GATCTTCGGTTAATGCAGCGGTCCT 31 421 863 Antisense
TGCAGCGGTCCTGATTGCAACTACA 693 577 876 Antisense
GTTCAGGAACTTTGTTTTGAGCGGG 229 443 906 Antisense
Sequence Source Affymetrix Proprietary Database