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[191139_at] 7TM chemoreceptor, sri family

Description B0454.2 /REP_DB=WormBase Gene ID /WP=CE07752 /GEN=sri-31 /TR=O17172 /GB=AAB70940.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 19      4grp_total > 12      6grp_cgc > 01      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 65.4
(1.3)
A 		15.6
(-3)
A 		37.9
(-1.1)
A 		85.4
(3)
A 		70
B 65.6
(1.2)
A 		82
(3)
A 		27.5
(-3)
A 		75.4
(2.3)
A 		55
C 50.8
(-3)
A 		62.8
(-2.1)
A 		52.6
(-2.9)
A 		126.9
(3)
A 		76
avr 60.6
(-0.7) 		53.5
(-1.5) 		39.3
(-3) 		95.9
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 104.4
(3)
A 		20.2
(-2.2)
A 		50.1
(-0.4)
A 		40
(-1)
A 		50
(-0.4)
A 		7.8
(-3)
A 		97
B 66.9
(3)
A 		22.5
(-1.7)
A 		32.8
(-0.6)
A 		18.7
(-2.1)
A 		21.7
(-1.8)
A 		10
(-3)
A 		57
C 52.7
(3)
A 		11.6
(-3)
A 		15.9
(-2.4)
A 		31.5
(-0.1)
A 		36
(0.6)
A 		22.3
(-1.4)
A 		41
avr 74.7
(3) 		18.1
(-2.5) 		32.9
(-1.1) 		30.1
(-1.4) 		35.9
(-0.8) 		13.4
(-3) 		61
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 23.8
(3)
A 		3.4
(-3)
A 		9.9
(-1.1)
A 		12.5
(-0.3)
A 		20
B 20.9
(3)
A 		20.3
(2.8)
A 		6.4
(-3)
A 		16.1
(1)
A 		15
C 16.8
(-3)
A 		18
(-1.4)
A 		18.3
(-1)
A 		21.4
(3)
A 		5
avr 20.5
(3) 		13.9
(-1.4) 		11.5
(-3) 		16.7
(0.5) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 19.2
(3)
A 		7.2
(-1.2)
A 		10.9
(0.1)
A 		10.1
(-0.2)
A 		15.1
(1.6)
A 		1.9
(-3)
A 		17
B 23.3
(3)
A 		7.5
(-1.8)
A 		8
(-1.7)
A 		5
(-2.6)
A 		8.8
(-1.4)
A 		3.7
(-3)
A 		20
C 19.5
(3)
A 		3.6
(-3)
A 		4.1
(-2.8)
A 		6.3
(-2)
A 		11.7
(0.1)
A 		7.5
(-1.5)
A 		16
avr 20.7
(3) 		6.1
(-2.4) 		7.7
(-1.8) 		7.1
(-2) 		11.9
(-0.2) 		4.4
(-3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191139_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4263
Sequence Type Exemplar sequence
Representative Public ID B0454.2 NCBI
Target Description B0454.2 /REP_DB=WormBase Gene ID /WP=CE07752 /GEN=sri-31 /TR=O17172 /GB=AAB70940.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062033(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062033 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-31) (sri-31) mRNA, complete cds. 11/11 None
SNAP00000034455 ENSEMBL cdna:SNAP chromosome:CEL140:II:3050998:3053156:1 11/11 None
B0454.2 ENSEMBL cdna:known chromosome:CEL140:II:3050998:3052317:1 gene:B0454.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3050996-3052316(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-31
Ensembl B0454.2
Entrez Gene 191906 Entrez gene
SwissProt O17172 EMBL-EBI
WormBase CE07752 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB70940 Serpentine receptor, class i protein 31 [Caenorhabditis elegans] ref|NP_494434.1| Serpentine Receptor, class I family member (sri-31) [Caenorhabditis elegans] 1.0E-177
blast AAB70940 Serpentine receptor, class i protein 31 [Caenorhabditis elegans] ref|NP_494434.1| Serpentine Receptor, class I family member (sri-31) [Caenorhabditis elegans] 1.0E-169
blast AAK71871 Serpentine receptor, class i protein 30 [Caenorhabditis elegans] ref|NP_494432.1| Serpentine Receptor, class I family member (sri-30) [Caenorhabditis elegans] 1.0E-129
blast AAK71871 Serpentine receptor, class i protein 30 [Caenorhabditis elegans] ref|NP_494432.1| Serpentine Receptor, class I family member (sri-30) [Caenorhabditis elegans] 1.0E-127
blast AAK71872 Serpentine receptor, class i protein 29 [Caenorhabditis elegans] ref|NP_494431.1| Serpentine Receptor, class I family member (sri-29) [Caenorhabditis elegans] 1.0E-97
blast AAK71872 Serpentine receptor, class i protein 29 [Caenorhabditis elegans] ref|NP_494431.1| Serpentine Receptor, class I family member (sri-29) [Caenorhabditis elegans] 1.0E-95
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 3.8E-75
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494434.1 7 15-37,61-83,93-115,135-157,192-214,241-263,278-300
B0454.2 7 15-37,61-83,93-115,135-157,192-214,241-263,278-300
SNAP00000034455 7 15-37,61-83,93-115,135-157,192-214,241-263,278-300
Sequence
Target Sequence 
>C. ELEGANS:191139_AT
aattatgaagctgagacccaccactgataaagtaccctatccaattatctatgtactttg
catgtgctactccatagtcatcacgttgtcatgctactctatccgaataagcaaggagga
acaatggcagttgatccaattgaactatccatctatggtgccgcagtttcaaaggcttcg
agaattttcgatagtccgtatgacttatgaattgattactcttttagtgcttaatgcagt
tggaacgtttaagacgacgcttgtgatatctgtgttagtatttcgaatgtataacgtgtt
atttttgatgcaaagtcaattgtcaagaactacattggctaagcataagattgcgttaaa
atgtttggttttgcagttcatgacaacacctatatccttcctcccggcgttcgtgcttct
tctgaacgtggcattcccaacaccatactcacaagaaatatctaacttttcactgatggt
tgctaccacgcact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTATGAAGCTGAGACCCACCACT 143 167 372 Antisense
GACCCACCACTGATAAAGTACCCTA 509 361 386 Antisense
AAGTACCCTATCCAATTATCTATGT 605 157 401 Antisense
ATGTACTTTGCATGTGCTACTCCAT 592 47 422 Antisense
GCTACTCCATAGTCATCACGTTGTC 351 303 437 Antisense
TTGTCATGCTACTCTATCCGAATAA 295 707 457 Antisense
TATCCATCTATGGTGCCGCAGTTTC 652 657 517 Antisense
GACGACGCTTGTGATATCTGTGTTA 417 379 624 Antisense
TTCATGACAACACCTATATCCTTCC 597 687 748 Antisense
GTGCTTCTTCTGAACGTGGCATTCC 266 479 784 Antisense
TCACTGATGGTTGCTACCACGCACT 556 625 841 Antisense
Sequence Source Affymetrix Proprietary Database