[Home] | [Total List]

[191138_at] 7TM receptor, srx family

Description F09F3.7 /REP_DB=WormBase Gene ID /WP=CE09290 /TR=P90821 /GB=CAB02905.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster 6grp_total > 55      4grp_total > 18      6grp_cgc > 46      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 1.9
(-3)
A 		12.5
(-2.2)
A 		3.3
(-2.9)
A 		84.2
(3)
A 		82
B 15.6
(-0.4)
A 		32.8
(3)
A 		25.3
(1.5)
A 		2.5
(-3)
A 		30
C 2.1
(-3)
A 		13.3
(-2.1)
A 		3.8
(-2.9)
A 		76.6
(3)
A 		75
avr 6.5
(-3) 		19.5
(-1.4) 		10.8
(-2.5) 		54.4
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 2.2
(-2.7)
A 		5.5
(-1.8)
A 		2.2
(-2.7)
A 		1.2
(-3)
A 		2.2
(-2.7)
A 		23.5
(3)
A 		22
B 2.1
(-2.8)
A 		4.8
(-2)
A 		20.7
(3)
A 		1.5
(-3)
A 		2.7
(-2.6)
A 		2
(-2.8)
A 		19
C 14.2
(-0.2)
A 		21.3
(1.4)
A 		18.9
(0.9)
A 		28.2
(3)
A 		1.8
(-3)
A 		15.7
(0.2)
A 		26
avr 6.2
(-0.9) 		10.5
(1.3) 		13.9
(3) 		10.3
(1.2) 		2.2
(-3) 		13.7
(2.9) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 0.7
(-3)
A 		2.7
(-2)
A 		0.9
(-2.9)
A 		12.3
(3)
A 		12
B 5
(0.6)
A 		8.1
(3)
A 		5.9
(1.3)
A 		0.5
(-3)
A 		8
C 0.7
(-3)
A 		3.8
(-1.5)
A 		1.3
(-2.7)
A 		12.9
(3)
A 		12
avr 2.1
(-3) 		4.9
(-0.4) 		2.7
(-2.4) 		8.6
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.4
(-2.9)
A 		1.9
(-1.2)
A 		0.5
(-2.8)
A 		0.3
(-3)
A 		0.7
(-2.6)
A 		5.7
(3)
A 		5
B 0.7
(-2.6)
A 		1.6
(-1.4)
A 		5
(3)
A 		0.4
(-3)
A 		1.1
(-2.1)
A 		0.7
(-2.6)
A 		5
C 5.3
(1.8)
A 		6.5
(3)
A 		4.8
(1.3)
A 		5.7
(2.2)
A 		0.6
(-3)
A 		5.3
(1.8)
A 		6
avr 2.1
(-0.5) 		3.3
(1.8) 		3.4
(2) 		2.1
(-0.5) 		0.8
(-3) 		3.9
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191138_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12686
Sequence Type Exemplar sequence
Representative Public ID F09F3.7 NCBI
Target Description F09F3.7 /REP_DB=WormBase Gene ID /WP=CE09290 /TR=P90821 /GB=CAB02905.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074033(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074033 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-134) (srx-134) mRNA, complete cds. 11/11 None
F09F3.7 ENSEMBL cdna:known chromosome:CEL140:V:13857975:13859065:-1 gene:F09F3.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13857974-13859065(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, srx family
Gene Symbol srx-134
Ensembl F09F3.7
Entrez Gene 184254 Entrez gene
SwissProt P90821 EMBL-EBI
WormBase CE36290 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02905 Hypothetical protein F09F3.7 [Caenorhabditis elegans] ref|NP_506434.2| Serpentine Receptor, class X family member (srx-134) [Caenorhabditis elegans] 1.0E-164
blast CAE66222 Hypothetical protein CBG11464 [Caenorhabditis briggsae] 3.0E-70
blast CAE65478 Hypothetical protein CBG10445 [Caenorhabditis briggsae] 1.0E-62
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506434.2 6 5-27,47-66,86-108,120-139,170-192,246-268
F09F3.7 6 5-27,47-66,86-108,120-139,170-192,246-268
Sequence
Target Sequence 
>C. ELEGANS:191138_AT
tgctatttactttccattttcaacaatttccaaaaaaccatttttcacaaactttggtat
ttttatttcaattttgcttgcaagttcgccagtgtttgtacccaaaatattcagttgcta
tataatttatgatccagagactactattttttcatcggaaaactacgatcggtgcgggga
agctatgaatcaatttttcgtgatatcaatagtaacattggcgttaatatctaatctgat
caacttggttatttttgccaaactcatgaaagataagtaccatattttcaagatgagtgg
agtcagtgaagctcaaaaaagcaagcgacggaaaaagtggcaaacgatgtacattcaaag
tgtcattcaagattttttgcaagcagtagatattataaatttatattacacatctgggct
tttcgatgatcctctttgggtttttgtgtttacttctgtttctttttcgtctgtatatat
gctcgacggagcaacaatggtgtatttccattcaaactttaaacttgtgtgctcttgtaa
aatcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTATTTACTTTCCATTTTCAACA 10 579 330 Antisense
ATTTTGCTTGCAAGTTCGCCAGTGT 156 15 400 Antisense
GTTCGCCAGTGTTTGTACCCAAAAT 233 441 413 Antisense
CAGAGACTACTATTTTTTCATCGGA 12 203 464 Antisense
AACTACGATCGGTGCGGGGAAGCTA 461 137 490 Antisense
ACATCTGGGCTTTTCGATGATCCTC 216 107 739 Antisense
GATGATCCTCTTTGGGTTTTTGTGT 591 409 754 Antisense
TGTGTTTACTTCTGTTTCTTTTTCG 220 555 774 Antisense
TTCTTTTTCGTCTGTATATATGCTC 571 689 789 Antisense
GCTCGACGGAGCAACAATGGTGTAT 192 299 810 Antisense
AAACTTGTGTGCTCTTGTAAAATCG 139 127 850 Antisense
Sequence Source Affymetrix Proprietary Database