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[191137_at] G-protein coupled receptor

Description F09F3.1 /REP_DB=WormBase Gene ID /WP=CE09284 /TR=P90817 /GB=CAB02902.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster 6grp_total > 92      4grp_total > 04      6grp_cgc > 97      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 39.3
(-2)
A 		23.2
(-3)
A 		32.9
(-2.4)
A 		117.5
(3)
A 		94
B 57.6
(1.8)
P 		20.4
(-3)
A 		44.2
(0.1)
A 		67.1
(3)
A 		47
C 48.8
(-1)
A 		45.7
(-1.2)
A 		17.7
(-3)
A 		111.5
(3)
A 		94
avr 48.6
(-1.4) 		29.8
(-3) 		31.6
(-2.8) 		98.7
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 45.3
(1.9)
A 		24.4
(-2)
A 		51
(3)
A 		19.2
(-3)
A 		44
(1.7)
A 		30.3
(-0.9)
A 		32
B 41.8
(2.5)
A 		44.3
(3)
A 		11.2
(-3)
A 		27
(-0.1)
A 		42.8
(2.7)
A 		26.3
(-0.3)
A 		33
C 15.3
(-2.8)
A 		34.5
(-0.1)
A 		23.1
(-1.7)
A 		56
(3)
A 		38.8
(0.5)
A 		13.9
(-3)
A 		42
avr 34.1
(0.5) 		34.4
(0.6) 		28.4
(-1.4) 		34.1
(0.5) 		41.9
(3) 		23.5
(-3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 14.3
(1.6)
A 		5
(-3)
A 		8.6
(-1.2)
A 		17.2
(3)
A 		12
B 18.4
(3)
P 		5
(-3)
A 		10.2
(-0.7)
A 		14.3
(1.2)
A 		13
C 16.2
(1.8)
A 		13.1
(0.3)
A 		6.2
(-3)
A 		18.8
(3)
A 		13
avr 16.3
(2.7) 		7.7
(-3) 		8.3
(-2.6) 		16.8
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 8.3
(-0.6)
A 		8.7
(-0.3)
A 		11.1
(1.4)
A 		4.9
(-3)
A 		13.3
(3)
A 		7.4
(-1.2)
A 		8
B 14.5
(1.8)
A 		14.8
(1.9)
A 		2.7
(-3)
A 		7.2
(-1.2)
A 		17.4
(3)
A 		9.8
(-0.1)
A 		15
C 5.7
(-2.2)
A 		10.5
(1.4)
A 		5.9
(-2.1)
A 		11.3
(2)
A 		12.6
(3)
A 		4.7
(-3)
A 		8
avr 9.5
(-0.8) 		11.3
(0.6) 		6.6
(-3) 		7.8
(-2.1) 		14.4
(3) 		7.3
(-2.5) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191137_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14292
Sequence Type Exemplar sequence
Representative Public ID F09F3.1 NCBI
Target Description F09F3.1 /REP_DB=WormBase Gene ID /WP=CE09284 /TR=P90817 /GB=CAB02902.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074027(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074027 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-130) (srx-130) mRNA, complete cds. 11/11 None
F09F3.1 ENSEMBL cdna:known chromosome:CEL140:V:13846036:13847551:1 gene:F09F3.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000022401 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13846035-13847551(+) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor
Gene Symbol srx-130
Ensembl F09F3.1
Entrez Gene 184249 Entrez gene
SwissProt P90817 EMBL-EBI
WormBase CE09284 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02902 Hypothetical protein F09F3.1 [Caenorhabditis elegans] ref|NP_506428.1| Serpentine Receptor, class X family member (srx-130) [Caenorhabditis elegans] 0.0
blast T24113 hypothetical protein R10D12.3 - Caenorhabditis elegans 9.0E-78
blast CAE66227 Hypothetical protein CBG11470 [Caenorhabditis briggsae] 2.0E-70
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506428.1 6 20-42,63-85,100-122,135-157,188-210,264-286
F09F3.1 6 20-42,63-85,100-122,135-157,188-210,264-286
Sequence
Target Sequence 
>C. ELEGANS:191137_AT
attcctatctgcttgtcatgtaatcggttttattttttatatttcccatttggtattaaa
cgttttcgaacaacttctgcaatcaattgggcaattttaatatgtataatctttgacact
gctcttgccatcttttcaattccagaaggatgcggctttgtttttgacccgaatttattc
atttggagaagtgaactatatccatgtgccctggacagatcggaatatcttccatatatc
aattttagtgccacaataattaccaattttttcaatattgcgatagttattcgtttgtta
agcatgagtaatagtggcgtaaatgccgaagaatcgagggcaagaagaaaacgttggatg
gtgaattttacacagtgtgtaatccaagatagtctccaattattcgacacaatcaatgcc
tactacatgtggagattttatgacgctgcttggtatcgtttcctattcgcaacattatcg
tttattttagtatctgcgcttgatggatttgtaatgtttatttatcatcaggaatgtctg
aaattgataacattaaagtggaaaagcacaactgttgaaccttctcctgtaaattccct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCCTATCTGCTTGTCATGTAATC 678 7 343 Antisense
ACGTTTTCGAACAACTTCTGCAATC 366 93 402 Antisense
TATAATCTTTGACACTGCTCTTGCC 121 661 447 Antisense
TTGCCATCTTTTCAATTCCAGAAGG 130 701 467 Antisense
GGATGCGGCTTTGTTTTTGACCCGA 38 493 490 Antisense
GAACTATATCCATGTGCCCTGGACA 614 349 535 Antisense
GATAGTCTCCAATTATTCGACACAA 498 425 730 Antisense
TTCGACACAATCAATGCCTACTACA 12 697 745 Antisense
TATGACGCTGCTTGGTATCGTTTCC 383 655 781 Antisense
GTATCGTTTCCTATTCGCAACATTA 13 455 795 Antisense
TTGAACCTTCTCCTGTAAATTCCCT 234 685 917 Antisense
Sequence Source Affymetrix Proprietary Database