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[191136_at] 7TM chemoreceptor, sri family

Description D2062.3 /REP_DB=WormBase Gene ID /WP=CE25835 /GEN=sri-71 /TR=O16599 /GB=AAB66065.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 11      4grp_total > 37      6grp_cgc > 44      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 55.4
(-3)
A 		62.3
(-0.9)
A 		57.4
(-2.4)
A 		75.4
(3)
A 		20
B 82.2
(2.2)
A 		89.3
(3)
A 		70
(0.9)
A 		34.4
(-3)
A 		55
C 93.9
(3)
A 		76.8
(0.9)
P 		44.6
(-3)
A 		89.7
(2.5)
A 		49
avr 77.2
(3) 		76.1
(2.7) 		57.3
(-3) 		66.5
(-0.2) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 76.7
(0.8)
A 		61.5
(-0.6)
A 		101.8
(3)
A 		34.3
(-3)
A 		45.1
(-2)
A 		64.7
(-0.3)
A 		68
B 59.2
(-0.5)
A 		106.9
(3)
A 		69.9
(0.3)
A 		75.6
(0.7)
A 		41.9
(-1.7)
A 		24.3
(-3)
A 		83
C 9.9
(-3)
A 		65.3
(3)
A 		33.3
(-0.5)
A 		12
(-2.8)
A 		41.3
(0.4)
A 		43.1
(0.6)
A 		55
avr 48.6
(-1.7) 		77.9
(3) 		68.3
(1.5) 		40.6
(-3) 		42.8
(-2.6) 		44
(-2.5) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 20.2
(3)
A 		13.5
(-1.4)
A 		15
(-0.4)
A 		11
(-3)
A 		9
B 26.2
(3)
A 		22
(1.7)
A 		16.2
(-0.2)
A 		7.3
(-3)
A 		19
C 31.1
(3)
A 		22.1
(-0.4)
P 		15.5
(-2.9)
A 		15.1
(-3)
A 		16
avr 25.8
(3) 		19.2
(0.3) 		15.6
(-1.2) 		11.1
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 14.1
(-0.6)
A 		21.9
(2.9)
A 		22.2
(3)
A 		8.7
(-3)
A 		13.6
(-0.8)
A 		15.7
(0.1)
A 		14
B 20.6
(-0.4)
A 		35.6
(3)
A 		17
(-1.2)
A 		20
(-0.5)
A 		17
(-1.2)
A 		9.1
(-3)
A 		27
C 3.7
(-2.6)
A 		19.9
(3)
A 		8.5
(-0.9)
A 		2.4
(-3)
A 		13.4
(0.8)
A 		14.4
(1.1)
A 		18
avr 12.8
(-2.1) 		25.8
(3) 		15.9
(-0.9) 		10.4
(-3) 		14.7
(-1.3) 		13.1
(-1.9) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191136_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4943
Sequence Type Exemplar sequence
Representative Public ID D2062.3 NCBI
Target Description D2062.3 /REP_DB=WormBase Gene ID /WP=CE25835 /GEN=sri-71 /TR=O16599 /GB=AAB66065.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061909(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061909 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-71) (sri-71) mRNA, complete cds. 11/11 None
D2062.3 ENSEMBL cdna:known chromosome:CEL140:II:2627750:2629197:1 gene:D2062.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009057 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2627748-2629196(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-71
Ensembl D2062.3
Entrez Gene 191928 Entrez gene
SwissProt O16599 EMBL-EBI
WormBase CE25835 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_494310 Serpentine Receptor, class I family member (sri-71) [Caenorhabditis elegans] gb|AAB66065.2| Serpentine receptor, class i protein 71 [Caenorhabditis elegans] 1.0E-175
blast AAB94259 Serpentine receptor, class i protein 73 [Caenorhabditis elegans] ref|NP_503247.2| Serpentine Receptor, class I family member (sri-73) [Caenorhabditis elegans] 3.0E-90
blast CAE71566 Hypothetical protein CBG18517 [Caenorhabditis briggsae] 4.0E-81
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 5.9E-71
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494310.1 6 13-35,82-104,132-154,193-215,243-265,278-300
D2062.3 6 13-35,82-104,132-154,193-215,243-265,278-300
Sequence
Target Sequence 
>C. ELEGANS:191136_AT
gtccacgacgttttgctatatttctgctattttctgtgcattttcgccccagttgtgctc
tgtgcgagcatgcaatatttaagcttgagccgagaggagcagttgggttatatcagagag
aatttcccgtacctctatccagatttcctgaagctcccgcattttgtcctgtacattcgg
tcgccgaaccttgtctggctgttcctaagcattttcgtcggcggcttaacgatttcccta
atattttcaatatttattttggatctatttcggttaatgcgaatcttacgactaaaaata
tctaggtcaacatatcaaaagcaccaagaagccttgagaagcctgatggttcaactgatg
acttctattctgtgcattggccctccatgtgctctggtggcgcttgtctacctggaaatt
ccaaatggaagattgctttctgaaattttaatagcaatgtttgcaagccattcctcaatc
aatatgctctcgcttttcatatttttcccgccatatcgcaggcttttcgggtggagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCCACGACGTTTTGCTATATTTCT 343 477 397 Antisense
TGCTATTTTCTGTGCATTTTCGCCC 36 581 421 Antisense
AGAGAGAATTTCCCGTACCTCTATC 684 65 511 Antisense
CTATCCAGATTTCCTGAAGCTCCCG 362 225 531 Antisense
CCCGCATTTTGTCCTGTACATTCGG 279 261 552 Antisense
GTACATTCGGTCGCCGAACCTTGTC 217 459 567 Antisense
TGTTCCTAAGCATTTTCGTCGGCGG 420 563 596 Antisense
CAACTGATGACTTCTATTCTGTGCA 328 187 748 Antisense
TGGCGCTTGTCTACCTGGAAATTCC 559 543 794 Antisense
ATGTTTGCAAGCCATTCCTCAATCA 305 47 853 Antisense
ATATCGCAGGCTTTTCGGGTGGAGT 408 17 909 Antisense
Sequence Source Affymetrix Proprietary Database