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[191134_at] BZIP transcription factor

Description F17A9.3 /REP_DB=WormBase Gene ID /WP=CE19799 /TR=O16213 /GB=AAK68335.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=BZIP transcription factor
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 70      6grp_highest_nonorm > 70      6grp_total > 03      4grp_total > 50      6grp_high1_sub > 04      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 626
1 2 3 4 range
A 2.7
(-3)
A 		466.4
(3)
P 		327.2
(1.2)
P 		18.3
(-2.8)
A 		464
B 41.6
(-2.9)
A 		629
(3)
P 		424.3
(0.9)
P 		34.3
(-3)
A 		595
C 21.6
(-3)
A 		596.1
(3)
P 		334.9
(0.3)
P 		103.7
(-2.1)
A 		575
avr 22
(-3) 		563.8
(3) 		362.1
(0.8) 		52.1
(-2.7) 		542

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 339
1 2 3 4 5 6 range
A 278.6
(2.6)
P 		288.3
(2.9)
P 		238.5
(1.4)
P 		293.2
(3)
P 		273.2
(2.4)
P 		91.5
(-3)
P 		202
B 348.7
(1.6)
P 		325
(1.2)
P 		250.1
(-0.3)
P 		420.7
(3)
P 		268.3
(0.1)
P 		108.6
(-3)
P 		312
C 288.9
(2.2)
P 		320
(3)
P 		169.5
(-0.8)
P 		283.8
(2.1)
P 		212.6
(0.3)
P 		82.1
(-3)
P 		238
avr 305.4
(2.3) 		311.1
(2.5) 		219.4
(0.2) 		332.6
(3) 		251.4
(1) 		94.1
(-3) 		239
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 170
1 2 3 4 range
A 1
(-3)
A 		101.2
(3)
P 		85.5
(2.1)
P 		2.7
(-2.9)
A 		100
B 13.3
(-2.8)
A 		155.3
(3)
P 		98.3
(0.7)
P 		7.3
(-3)
A 		148
C 7.2
(-3)
A 		171.4
(3)
P 		116.7
(1)
P 		17.5
(-2.6)
A 		164
avr 7.2
(-3) 		142.6
(3) 		100.2
(1.1) 		9.2
(-2.9) 		135

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 51.4
(-0.8)
P 		102.5
(3)
P 		51.9
(-0.8)
P 		74.4
(0.9)
P 		82.4
(1.5)
P 		22.3
(-3)
P 		80
B 121.3
(3)
P 		108.2
(2)
P 		60.7
(-1.5)
P 		111.4
(2.3)
P 		109
(2.1)
P 		40.5
(-3)
P 		81
C 107.1
(3)
P 		97.6
(2.3)
P 		43.1
(-1.8)
P 		57.1
(-0.8)
P 		68.8
(0.1)
P 		27.5
(-3)
P 		80
avr 93.3
(2.2) 		102.8
(3) 		51.9
(-1.2) 		81
(1.2) 		86.7
(1.7) 		30.1
(-3) 		73
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191134_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12429
Sequence Type Exemplar sequence
Representative Public ID F17A9.3 NCBI
Target Description F17A9.3 /REP_DB=WormBase Gene ID /WP=CE19799 /TR=O16213 /GB=AAK68335.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=BZIP transcription factor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072175(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072175 NCBI Caenorhabditis elegans F17A9.3 (F17A9.3) mRNA, complete cds. 11/11 None
SNAP00000021119 ENSEMBL cdna:SNAP chromosome:CEL140:V:6108885:6117243:1 9/11 None
GENEFINDER00000021131 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6108885:6111564:1 9/11 None
F17A9.3 ENSEMBL cdna:known chromosome:CEL140:V:6108269:6110102:1 gene:F17A9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6108329-6109992(+) 100.0 100.0
Public Domain and Genome References
Gene Title BZIP transcription factor
Ensembl F17A9.3
Entrez Gene 178998 Entrez gene
SwissProt O16213 EMBL-EBI
WormBase CE19799 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB65279 Hypothetical protein F17A9.2 [Caenorhabditis elegans] ref|NP_504577.1| F17A9.2 [Caenorhabditis elegans] 0.0
blast CAE64512 Hypothetical protein CBG09248 [Caenorhabditis briggsae] 0.0
blast T31706 hypothetical protein F17A9.3 - Caenorhabditis elegans 0.0
blast AAB65279 Hypothetical protein F17A9.2 [Caenorhabditis elegans] ref|NP_504577.1| F17A9.2 [Caenorhabditis elegans] 1.0E-180
blast CAE64512 Hypothetical protein CBG09248 [Caenorhabditis briggsae] 1.0E-162
blast AAK68335 Hypothetical protein F17A9.3 [Caenorhabditis elegans] ref|NP_504576.1| F17A9.3 [Caenorhabditis elegans] 7.0E-91
blast T31706 hypothetical protein F17A9.3 - Caenorhabditis elegans 2.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR006767 EMBL-EBI Protein similar to CwfJ, C-terminal 2 1.8E-48
Pfam IPR006768 EMBL-EBI Protein similar to CwfJ, C-terminal 1 1.5E-67
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 0.0029
Sequence
Target Sequence 
>C. ELEGANS:191134_AT
ttcctattcatccagcattactttcaaatacacatttactacatctcaatacctataatc
caacaacctacgaatcaactgaacggctctttgagcaaaacaataacaatagtgaaaagg
cagagtcatgctcatcgcgagacagtagtcatgattcatcatccccgacatcaactggag
gaagcagtcgggataacgtcattgtcagaaatgaattgaaacggaaaaaggatcaagtga
aagatgtagcatattgggaacgacgacgaaagaataatgatgctgcgaaacgaagtcgtg
atcaaagaagaatgaaagaagatgaaatggctcatagagcaacaagtctagaacgtgaaa
atatgttgctccgtgtagaattagatcaactgagagcagaaactgataagctaagagcac
tgattttgacgacacctacaacgtctattagtattccaattcctctacaatctttaccac
ttctcactgcacaaacggctccagcttcatcagtgataactacaagtcagatgtatgcac
ctcttccattaaaaattccaaagactccttcaccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCTATTCATCCAGCATTACTTTC 378 699 116 Antisense
AATACCTATAATCCAACAACCTACG 596 171 163 Antisense
GAATCAACTGAACGGCTCTTTGAGC 421 327 187 Antisense
GAGTCATGCTCATCGCGAGACAGTA 102 401 238 Antisense
GTAGTCATGATTCATCATCCCCGAC 431 455 260 Antisense
GCAGTCGGGATAACGTCATTGTCAG 186 309 299 Antisense
GAGCACTGATTTTGACGACACCTAC 670 389 530 Antisense
AGTATTCCAATTCCTCTACAATCTT 428 63 565 Antisense
GGCTCCAGCTTCATCAGTGATAACT 535 539 612 Antisense
CAAGTCAGATGTATGCACCTCTTCC 150 185 638 Antisense
AAAATTCCAAAGACTCCTTCACCAT 261 133 667 Antisense
Sequence Source Affymetrix Proprietary Database