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[191132_at] 7TM chemoreceptor, sri family

Description F39E9.3 /REP_DB=WormBase Gene ID /WP=CE25878 /GEN=sri-63 /TR=O17111 /GB=AAB70367.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 42      4grp_total > 62      6grp_cgc > 70      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 43
(2.2)
A 		35.3
(1)
A 		48.1
(3)
A 		8.8
(-3)
A 		39
B 45.7
(3)
A 		27.6
(-0.6)
A 		16.7
(-2.8)
A 		15.5
(-3)
A 		30
C 25.7
(2.7)
A 		4.4
(-3)
A 		26.9
(3)
A 		7.3
(-2.2)
A 		23
avr 38.1
(3) 		22.4
(-0.4) 		30.6
(1.4) 		10.5
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 51.2
(2.3)
A 		11.8
(-2.1)
A 		57.2
(3)
A 		3.8
(-3)
A 		20.2
(-1.2)
A 		13.1
(-2)
A 		53
B 25.6
(2.6)
A 		17.2
(0.2)
A 		8.4
(-2.3)
A 		17.8
(0.4)
A 		27
(3)
A 		5.8
(-3)
A 		21
C 6.8
(-2.6)
A 		36.3
(0.6)
A 		39.8
(1)
A 		58
(3)
A 		8
(-2.5)
A 		3.3
(-3)
A 		55
avr 27.9
(1.4) 		21.8
(0.1) 		35.1
(3) 		26.5
(1.1) 		18.4
(-0.6) 		7.4
(-3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 15.6
(3)
A 		7.7
(-0.3)
A 		12.6
(1.7)
A 		1.3
(-3)
A 		14
B 14.6
(3)
A 		6.8
(-1.1)
A 		3.9
(-2.7)
A 		3.3
(-3)
A 		11
C 8.5
(2.3)
A 		1.3
(-2.9)
A 		9.4
(3)
A 		1.2
(-3)
A 		8
avr 12.9
(3) 		5.3
(-1.1) 		8.6
(0.7) 		1.9
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 9.4
(1.4)
A 		4.2
(-1.3)
A 		12.4
(3)
A 		1
(-3)
A 		6.1
(-0.3)
A 		3.2
(-1.8)
A 		11
B 8.9
(1.6)
A 		5.7
(-0.5)
A 		2
(-3)
A 		4.7
(-1.2)
A 		11
(3)
A 		2.2
(-2.9)
A 		9
C 2.5
(-2.2)
A 		11.1
(2.7)
A 		10.1
(2.1)
A 		11.7
(3)
A 		2.6
(-2.2)
A 		1.1
(-3)
A 		11
avr 6.9
(1.7) 		7
(1.8) 		8.2
(3) 		5.8
(0.6) 		6.6
(1.4) 		2.2
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191132_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5806
Sequence Type Exemplar sequence
Representative Public ID F39E9.3 NCBI
Target Description F39E9.3 /REP_DB=WormBase Gene ID /WP=CE25878 /GEN=sri-63 /TR=O17111 /GB=AAB70367.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062097(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062097 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-63) (sri-63) mRNA, complete cds. 11/11 None
SNAP00000020862 ENSEMBL cdna:SNAP chromosome:CEL140:II:3285120:3289032:1 9/11 None
GENEFINDER00000020878 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3284871:3292074:1 11/11 None
F39E9.3 ENSEMBL cdna:known chromosome:CEL140:II:3287369:3289027:1 gene:F39E9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3287367-3289026(+) 99.9 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-63
Ensembl F39E9.3
Entrez Gene 191927 Entrez gene
SwissProt O17111 EMBL-EBI
WormBase CE25878 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAZ91348 Hypothetical protein F39E9.4 [Caenorhabditis elegans] 0.0
blast NP_494497 F39E9.4 [Caenorhabditis elegans] 0.0
blast AAB70367 Serpentine receptor, class i protein 63 [Caenorhabditis elegans] ref|NP_494498.1| Serpentine Receptor, class I family member (sri-63) [Caenorhabditis elegans] 1.0E-176
blast AAB70367 Serpentine receptor, class i protein 63 [Caenorhabditis elegans] ref|NP_494498.1| Serpentine Receptor, class I family member (sri-63) [Caenorhabditis elegans] 1.0E-174
blast G88094 protein F39E9.3 [imported] - Caenorhabditis elegans 1.0E-149
blast AAK68370 Serpentine receptor, class i protein 62 [Caenorhabditis elegans] ref|NP_494335.1| Serpentine Receptor, class I family member (sri-62) [Caenorhabditis elegans] 1.0E-136
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.2E-77
Pfam IPR008753 EMBL-EBI Peptidase M13 1.8E-8
Pfam IPR000718 EMBL-EBI Peptidase M13, neprilysin 2.8E-66
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.2E-77
Pfam IPR008753 EMBL-EBI Peptidase M13 1.8E-8
Pfam IPR000718 EMBL-EBI Peptidase M13, neprilysin 2.9E-88
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494498.1 7 13-35,47-66,81-103,130-152,200-222,242-264,274-296
F39E9.3 7 13-35,47-66,81-103,130-152,200-222,242-264,274-296
SNAP00000020862 3 551-573,593-615,625-647
GENEFINDER00000020878 10 570-592,599-621,636-658,686-708,756-778,798-820,830-852,990-1012,1017-1039,1046-1068
Sequence
Target Sequence 
>C. ELEGANS:191132_AT
cacagactagcattgatccggacttgcagatggagtatgttagagtgaagttcccagagt
acctctccggcttccaaagccttcctaacttctccatctacgaagctgacgcatatttcc
tggtcgcattgcttctcacaacgactggtggaatactatcgcttctaattttatgcatag
tcctaacaaatatttttctgatgctcgcacttctgaaaactcaaatctctgcctcaaact
atcgaaaacatcgagccgcaatttggagcctattggctcaatttgccacgtcatctgtct
tatttttttcgccaatcgttttcgtgtttgtcgtgttgatcgggatcaatggagctcaag
caattgtcgaggttctcctggtcattggttgcttgcattcctgcctaaacgttactgtat
taattttgacgttcccgccataccgaaagcatgtatgttctcttatcaagcgggaaaaga
gtttcgcaaaaactcgagtgatggttctgccttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACAGACTAGCATTGATCCGGACTT 257 195 467 Antisense
GAGTGAAGTTCCCAGAGTACCTCTC 255 401 509 Antisense
AAGCTGACGCATATTTCCTGGTCGC 490 149 569 Antisense
TCGCATTGCTTCTCACAACGACTGG 68 601 590 Antisense
ATTTTTCTGATGCTCGCACTTCTGA 500 15 658 Antisense
AAACATCGAGCCGCAATTTGGAGCC 122 127 712 Antisense
GTCATCTGTCTTATTTTTTTCGCCA 566 467 756 Antisense
TTTCGCCAATCGTTTTCGTGTTTGT 116 669 773 Antisense
GGTCATTGGTTGCTTGCATTCCTGC 398 503 846 Antisense
CATTCCTGCCTAAACGTTACTGTAT 438 215 862 Antisense
AAACTCGAGTGATGGTTCTGCCTTC 472 125 956 Antisense
Sequence Source Affymetrix Proprietary Database