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[191131_at] 7TM chemoreceptor, sri family

Description B0454.4 /REP_DB=WormBase Gene ID /WP=CE25743 /GEN=sri-29 /TR=O17170 /GB=AAK71872.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 0      4grp_total > 43      6grp_total_sub > Hat      6grp_cgc > 64      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 14
(-0.7)
A 		17.6
(3)
A 		12.7
(-2.1)
A 		11.8
(-3)
A 		6
B 17
(2.4)
A 		18
(3)
A 		10.7
(-1.3)
A 		7.7
(-3)
A 		10
C 11.2
(-3)
A 		15.6
(0.1)
A 		14.2
(-0.9)
A 		19.8
(3)
A 		9
avr 14.1
(-0.9) 		17.1
(3) 		12.5
(-3) 		13.1
(-2.2) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 9.1
(-0.2)
A 		11
(1.3)
A 		5.3
(-3)
A 		9.5
(0.2)
A 		9.6
(0.2)
A 		13.3
(3)
A 		8
B 9.3
(-0.1)
A 		9.9
(0.7)
A 		11.2
(2.4)
A 		11.7
(3)
A 		9
(-0.4)
A 		7
(-3)
A 		5
C 7.4
(-3)
A 		12.3
(3)
A 		10.2
(0.4)
A 		9.7
(-0.2)
A 		8.9
(-1.2)
A 		9.4
(-0.6)
A 		5
avr 8.6
(-3) 		11.1
(3) 		8.9
(-2.3) 		10.3
(1.1) 		9.2
(-1.6) 		9.9
(0.1) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 5.1
(3)
A 		3.8
(0.7)
A 		3.3
(-0.2)
A 		1.7
(-3)
A 		3
B 5.4
(3)
A 		4.4
(1.4)
A 		2.5
(-1.6)
A 		1.6
(-3)
A 		4
C 3.7
(-1.5)
A 		4.5
(1.5)
A 		4.9
(3)
A 		3.3
(-3)
A 		2
avr 4.7
(3) 		4.2
(1.8) 		3.6
(0.4) 		2.2
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 1.7
(-1.9)
A 		3.9
(3)
A 		1.2
(-3)
A 		2.4
(-0.3)
A 		2.9
(0.8)
A 		3.2
(1.4)
A 		3
B 3.3
(1.2)
A 		3.3
(1.2)
A 		2.7
(-2.4)
A 		3.1
(0)
A 		3.6
(3)
A 		2.6
(-3)
A 		1
C 2.7
(-0.5)
A 		3.7
(3)
A 		2.6
(-0.9)
A 		2
(-3)
A 		2.9
(0.2)
A 		3.2
(1.2)
A 		2
avr 2.6
(-1.3) 		3.6
(3) 		2.2
(-3) 		2.5
(-1.7) 		3.1
(0.9) 		3
(0.4) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191131_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5648
Sequence Type Exemplar sequence
Representative Public ID B0454.4 NCBI
Target Description B0454.4 /REP_DB=WormBase Gene ID /WP=CE25743 /GEN=sri-29 /TR=O17170 /GB=AAK71872.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062030(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062030 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-29) (sri-29) mRNA, complete cds. 11/11 None
B0454.4 ENSEMBL cdna:known chromosome:CEL140:II:3044318:3046110:1 gene:B0454.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034452 8/11 Cross Hyb Matching Probes None
GENEFINDER00000034463 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3044316-3046109(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-29
Ensembl B0454.4
Entrez Gene 191904 Entrez gene
SwissProt O17170 EMBL-EBI
WormBase CE25743 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK71872 Serpentine receptor, class i protein 29 [Caenorhabditis elegans] ref|NP_494431.1| Serpentine Receptor, class I family member (sri-29) [Caenorhabditis elegans] 1.0E-166
blast H88087 protein B0454.4 [imported] - Caenorhabditis elegans 1.0E-157
blast AAB70941 Serpentine receptor, class i protein 28 [Caenorhabditis elegans] ref|NP_494433.1| Serpentine Receptor, class I family member (sri-28) [Caenorhabditis elegans] 8.0E-91
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 3.0E-86
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494431.1 7 15-37,50-72,92-114,135-157,197-219,250-272,287-306
B0454.4 7 15-37,50-72,92-114,135-157,197-219,250-272,287-306
Sequence
Target Sequence 
>C. ELEGANS:191131_AT
tatcaaacccgtcaagtagcctaacctatattataatctaccatttatgcatgtcctact
cactggctatcacactcgcatggtacttcagcgagactagtaaagaagatcaatggaagt
tgattagtcaagaccatccgtcgctggtcccgaagtatcagcagcttaatgaattttatt
acacatacttcaacagtgcatatatttttattatattcctagtgctcactgctgctggaa
ccttaaagacgatcattgtgatatctcttctagtacttcgaatgtttaaagttctatcag
atgttaaaagtcgcctatcgaaggggacactgagcaggcataaggttgcgctgagaagtt
tgattatgcagttcatgacaaccccaatatccttcctaccacccttcatgctggtagtcg
tcgccttgtttccaaccagctactctcaagcaatctcccagggctcttttatggtctcca
ccacccattccataatcaactccctggttgtccttac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCAAACCCGTCAAGTAGCCTAAC 210 641 398 Antisense
CATTTATGCATGTCCTACTCACTGG 76 213 439 Antisense
CTATCACACTCGCATGGTACTTCAG 165 225 464 Antisense
TGATTAGTCAAGACCATCCGTCGCT 39 561 518 Antisense
GTCGCTGGTCCCGAAGTATCAGCAG 643 473 537 Antisense
TATATTCCTAGTGCTCACTGCTGCT 55 663 609 Antisense
TGTGATATCTCTTCTAGTACTTCGA 146 557 654 Antisense
TACCACCCTTCATGCTGGTAGTCGT 535 647 794 Antisense
TTCCAACCAGCTACTCTCAAGCAAT 707 699 827 Antisense
CAATCTCCCAGGGCTCTTTTATGGT 53 175 848 Antisense
TAATCAACTCCCTGGTTGTCCTTAC 370 633 890 Antisense
Sequence Source Affymetrix Proprietary Database