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[191129_s_at]

Description ZK1321.2 /REP_DB=WormBase Gene ID /WP=CE06683 /TR=Q09658 /GB=CAA88477.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=potassium channel protein
Cluster 6grp_highest_10_10 > 31      6grp_high1_10_10 > 13      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 60      6grp_total > 14      4grp_total > 22      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 516
1 2 3 4 range
A 729.3
(3)
P 		401.4
(-1.2)
P 		262.2
(-3)
P 		672.3
(2.3)
P 		467
B 724.7
(3)
P 		380
(-1.6)
P 		275.1
(-3)
P 		694.1
(2.6)
P 		450
C 661.6
(1.6)
P 		383.4
(-1.6)
P 		266.3
(-3)
P 		777.9
(3)
P 		512
avr 705.2
(2.9) 		388.3
(-1.4) 		267.9
(-3) 		714.8
(3) 		447

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 350
1 2 3 4 5 6 range
A 590.7
(3)
P 		490.7
(1)
P 		425.8
(-0.2)
P 		349.4
(-1.7)
P 		313.8
(-2.4)
P 		285.2
(-3)
P 		306
B 558
(2.6)
P 		581.5
(3)
P 		442.5
(0.6)
P 		363.1
(-0.8)
P 		338.3
(-1.3)
P 		240.7
(-3)
P 		341
C 513.6
(3)
P 		488.2
(2.4)
P 		363.9
(-0.8)
P 		405.9
(0.3)
P 		274.7
(-3)
P 		296.1
(-2.5)
P 		239
avr 554.1
(3) 		520.1
(2.3) 		410.7
(-0.1) 		372.8
(-0.9) 		308.9
(-2.3) 		274
(-3) 		280
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 202
1 2 3 4 range
A 265.5
(3)
P 		87.1
(-2.4)
P 		68.6
(-3)
P 		98.4
(-2.1)
P 		197
B 231.1
(3)
P 		93.8
(-1.9)
P 		63.7
(-3)
P 		147.9
(0)
P 		167
C 219
(3)
P 		110.2
(-2.2)
P 		92.8
(-3)
P 		131.2
(-1.2)
P 		126
avr 238.5
(3) 		97
(-2.2) 		75
(-3) 		125.8
(-1.1) 		164

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 108.9
(-0.7)
P 		174.5
(3)
P 		92.7
(-1.7)
P 		88.6
(-1.9)
P 		94.7
(-1.6)
P 		69.4
(-3)
P 		105
B 194.1
(3)
P 		193.6
(3)
P 		107.5
(-2)
P 		96.2
(-2.6)
P 		137.4
(-0.3)
P 		89.7
(-3)
P 		104
C 190.4
(3)
P 		149
(0.7)
P 		92.6
(-2.4)
P 		81.6
(-3)
P 		88.9
(-2.6)
P 		99.1
(-2)
P 		109
avr 164.5
(2.5) 		172.4
(3) 		97.6
(-2.2) 		88.8
(-2.8) 		107
(-1.5) 		86.1
(-3) 		86
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191129_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2728
Sequence Type Exemplar sequence
Representative Public ID ZK1321.2 NCBI
Target Description ZK1321.2 /REP_DB=WormBase Gene ID /WP=CE06683 /TR=Q09658 /GB=CAA88477.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=potassium channel protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182135(11), NM_182134(11), NM_063703(11), NM_182136(11), NM_001027345(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182135 NCBI Caenorhabditis elegans ZK1321.2c (ZK1321.2) mRNA, complete cds. 11/11 None
NM_182134 NCBI Caenorhabditis elegans ZK1321.2b (ZK1321.2) mRNA, complete cds. 11/11 None
NM_063703 NCBI Caenorhabditis elegans ZK1321.2a (ZK1321.2) mRNA, complete cds. 11/11 None
NM_182136 NCBI Caenorhabditis elegans ZK1321.2d (ZK1321.2) mRNA, complete cds. 11/11 None
NM_001027345 NCBI Caenorhabditis elegans ZK1321.2e (ZK1321.2) mRNA, complete cds. 11/11 None
SNAP00000027163 ENSEMBL cdna:SNAP chromosome:CEL140:II:9765350:9767898:1 11/11 None
GENEFINDER00000027168 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9764918:9767898:1 11/11 None
ZK1321.2a ENSEMBL cdna:known chromosome:CEL140:II:9758145:9767898:1 gene:ZK1321.2 11/11 None
ZK1321.2c ENSEMBL cdna:known chromosome:CEL140:II:9758145:9768176:1 gene:ZK1321.2 11/11 None
ZK1321.2b ENSEMBL cdna:known chromosome:CEL140:II:9758145:9767898:1 gene:ZK1321.2 11/11 None
ZK1321.2d.1 ENSEMBL cdna:known chromosome:CEL140:II:9760624:9767898:1 gene:ZK1321.2 11/11 None
ZK1321.2d.2 ENSEMBL cdna:known chromosome:CEL140:II:9760662:9767898:1 gene:ZK1321.2 11/11 None
ZK1321.2e ENSEMBL cdna:known chromosome:CEL140:II:9763030:9767898:1 gene:ZK1321.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9764914-9767895(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZK1321.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD57716 Hypothetical protein ZK1321.2c [Caenorhabditis elegans] ref|NP_871935.1| ZK1321.2c [Caenorhabditis elegans] 0.0
blast CAD57717 Hypothetical protein ZK1321.2d [Caenorhabditis elegans] ref|NP_871936.1| ZK1321.2d [Caenorhabditis elegans] 0.0
blast CAD57715 Hypothetical protein ZK1321.2b [Caenorhabditis elegans] ref|NP_871934.1| ZK1321.2b [Caenorhabditis elegans] 0.0
blast CAA88477 Hypothetical protein ZK1321.2a [Caenorhabditis elegans] ref|NP_496104.2| ZK1321.2a [Caenorhabditis elegans] 0.0
blast CAH04712 Hypothetical protein ZK1321.2e [Caenorhabditis elegans] ref|NP_001022516.1| ZK1321.2e [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005821 EMBL-EBI Ion transport protein 8.3E-45
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 1.4E-35
Pfam IPR005821 EMBL-EBI Ion transport protein 8.3E-45
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 6.8E-43
Pfam IPR005821 EMBL-EBI Ion transport protein 8.3E-45
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 6.8E-43
Pfam IPR005821 EMBL-EBI Ion transport protein 8.3E-45
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 1.4E-35
Pfam IPR005821 EMBL-EBI Ion transport protein 8.3E-45
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 6.8E-43
Pfam IPR005821 EMBL-EBI Ion transport protein 8.3E-45
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 6.8E-43
Pfam IPR005821 EMBL-EBI Ion transport protein 8.3E-45
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 6.8E-43
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_871935.1 6 272-294,326-348,355-377,425-447,460-482,487-509
NP_871934.1 6 260-282,314-336,343-365,413-435,448-470,475-497
NP_496104.2 6 217-239,271-293,300-322,370-392,405-427,432-454
NP_871936.1 6 237-259,291-313,320-342,390-412,425-447,452-474
NP_001022516.1 6 184-206,238-260,267-289,337-359,372-394,399-421
ZK1321.2a 6 217-239,271-293,300-322,370-392,405-427,432-454
ZK1321.2c 6 272-294,326-348,355-377,425-447,460-482,487-509
ZK1321.2b 6 260-282,314-336,343-365,413-435,448-470,475-497
ZK1321.2d.1 6 237-259,291-313,320-342,390-412,425-447,452-474
ZK1321.2d.2 6 237-259,291-313,320-342,390-412,425-447,452-474
ZK1321.2e 6 184-206,238-260,267-289,337-359,372-394,399-421
SNAP00000027163 6 171-193,225-247,254-276,324-346,359-381,386-408
GENEFINDER00000027168 6 196-218,250-272,279-301,349-371,384-406,411-433
Sequence
Target Sequence 
>C. ELEGANS:191129_S_AT
gtgacatttgccacgtctgtgttgaatattattgactttgtggcaattgctccgtttttt
gttaactttttcttcgcggacacaagcaaatccaattcatcgatgtcgtttgcagtgctc
cgtgtgctccgattggttcgagtattcagagttttcaaacttagtcgacattccgttggt
cttcaaattcttggaaaaactttccgatcctctgtccaagagttttgtcttctcattttc
ttcatggcaattgctctggttctctttgcatcaggaatgtattttgcggagcaaggggag
ccaaactcaaagttcacttcaattccagcaagcttctggtttgtactggtcacaatgaca
acagtcggatatggagatttggttccgctgagtccatttggaaaagttgtgggcggtatg
tgcgcaatgattggtgtcttgacattggcacttccagttcctattattgttgcaaatttc
aaacacttctaccgacaagaaaaccgtcttgcctcgatgaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGACATTTGCCACGTCTGTGTTGA 115 483 838 Antisense
GACTTTGTGGCAATTGCTCCGTTTT 157 373 871 Antisense
TTTCCGATCCTCTGTCCAAGAGTTT 92 669 1038 Antisense
TTGTCTTCTCATTTTCTTCATGGCA 398 707 1062 Antisense
GCAATTGCTCTGGTTCTCTTTGCAT 442 323 1084 Antisense
GTTCACTTCAATTCCAGCAAGCTTC 516 445 1149 Antisense
CAAGCTTCTGGTTTGTACTGGTCAC 580 185 1166 Antisense
AGATTTGGTTCCGCTGAGTCCATTT 555 65 1212 Antisense
TGGTGTCTTGACATTGGCACTTCCA 457 553 1269 Antisense
GCACTTCCAGTTCCTATTATTGTTG 331 317 1285 Antisense
GAAAACCGTCTTGCCTCGATGAAAT 478 353 1336 Antisense
Sequence Source Affymetrix Proprietary Database