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[191128_at] 7TM chemoreceptor, sri family

Description D2062.2 /REP_DB=WormBase Gene ID /WP=CE25834 /GEN=sri-37 /TR=O16600 /GB=AAB66064.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 29      4grp_total > 48      6grp_cgc > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 1.9
(-3)
A 		45.8
(3)
A 		21.6
(-0.3)
A 		4.2
(-2.7)
A 		44
B 20.7
(0.7)
A 		3.9
(-3)
A 		31.5
(3)
A 		5.4
(-2.7)
A 		28
C 19.9
(-0.2)
A 		7.8
(-3)
A 		15
(-1.3)
A 		33.6
(3)
A 		26
avr 14.2
(-3) 		19.2
(0.5) 		22.7
(3) 		14.4
(-2.9) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 52.8
(3)
A 		24
(-0.4)
A 		1.7
(-3)
A 		4.1
(-2.7)
A 		30.3
(0.4)
A 		3.1
(-2.8)
A 		51
B 33.7
(2.5)
A 		36.7
(3)
A 		2.4
(-2.9)
A 		1.9
(-3)
A 		23.4
(0.7)
A 		9.3
(-1.7)
A 		35
C 5.7
(-2)
A 		9.4
(-0.8)
A 		3.2
(-2.8)
A 		2.9
(-2.9)
A 		21.7
(3)
A 		2.5
(-3)
A 		19
avr 30.7
(3) 		23.4
(1.5) 		2.4
(-3) 		3
(-2.9) 		25.1
(1.8) 		5
(-2.4) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.7
(-2.9)
A 		9.9
(3)
A 		5.6
(0.2)
A 		0.6
(-3)
A 		9
B 6.6
(2.3)
A 		1
(-3)
A 		7.3
(3)
A 		1.1
(-2.9)
A 		6
C 6.6
(3)
A 		2.3
(-3)
A 		5.2
(1)
A 		5.7
(1.7)
A 		4
avr 4.6
(0.6) 		4.4
(0.3) 		6
(3) 		2.5
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 9.7
(3)
A 		8.5
(2.2)
A 		0.4
(-3)
A 		1
(-2.6)
A 		9.1
(2.6)
A 		0.8
(-2.7)
A 		9
B 11.7
(2.7)
A 		12.2
(3)
A 		0.6
(-2.9)
A 		0.5
(-3)
A 		9.5
(1.6)
A 		3.5
(-1.5)
A 		12
C 2.1
(-1.6)
A 		2.9
(-0.8)
A 		0.8
(-2.8)
A 		0.6
(-3)
A 		7
(3)
A 		0.8
(-2.8)
A 		6
avr 7.8
(2.5) 		7.9
(2.5) 		0.6
(-3) 		0.7
(-2.9) 		8.5
(3) 		1.7
(-2.2) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191128_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5131
Sequence Type Exemplar sequence
Representative Public ID D2062.2 NCBI
Target Description D2062.2 /REP_DB=WormBase Gene ID /WP=CE25834 /GEN=sri-37 /TR=O16600 /GB=AAB66064.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061910(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061910 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-37) (sri-37) mRNA, complete cds. 11/11 None
D2062.2 ENSEMBL cdna:known chromosome:CEL140:II:2629571:2631232:1 gene:D2062.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2629569-2631231(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-37
Ensembl D2062.2
Entrez Gene 191911 Entrez gene
SwissProt O16600 EMBL-EBI
WormBase CE33607 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_494311 Serpentine Receptor, class I family member (sri-37) [Caenorhabditis elegans] gb|AAB66064.3| Serpentine receptor, class i protein 37 [Caenorhabditis elegans] 1.0E-179
blast NP_001022422 Serpentine Receptor, class I family member (sri-40) [Caenorhabditis elegans] gb|AAX22282.1| Serpentine receptor, class i protein 40, isoform b [Caenorhabditis elegans] 1.0E-71
blast NP_001022421 Serpentine Receptor, class I family member (sri-40) [Caenorhabditis elegans] gb|AAF60478.4| Serpentine receptor, class i protein 40, isoform a [Caenorhabditis elegans] 2.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.1E-61
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494311.2 7 10-32,45-67,87-109,130-149,186-219,239-261,271-293
D2062.2 7 10-32,45-67,87-109,130-149,186-219,239-261,271-293
Sequence
Target Sequence 
>C. ELEGANS:191128_AT
gatggccgaaaatcttctgctactctatgatttcagtagcatctgtgatccctttcttta
ttttctatgctctatgcagagctggaatgagccgagaagagcagttggtctatgtgggaa
ggagttatccagaataccttcttcaattctcaaaccttaccaacatagccatctacgaca
tatctatctggatcttgatagtttgtgcgatttctgcatttggcggagtttcctgcatcc
tcctcttctcctacataacaattgacctatttctactgctgaaatccatgcaaaaaagct
tatcgcccagtaactatgaccgtcatagatctgcagtgtacagtttgcttgctcaatttg
ccacgtcatcattgatccttgccccaccatttgtttatatggtggttacaattaatcaag
tggattttggacagtttttagtggaaattattctggctgtgtttgcatcgaggagtgtgg
ttaatgcggtagtgcttatcacaacaactccgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGCCGAAAATCTTCTGCTACTC 624 405 434 Antisense
TCAGTAGCATCTGTGATCCCTTTCT 628 623 466 Antisense
CCCTTTCTTTATTTTCTATGCTCTA 105 259 483 Antisense
TACCTTCTTCAATTCTCAAACCTTA 559 645 568 Antisense
GCATTTGGCGGAGTTTCCTGCATCC 301 309 649 Antisense
ACAATTGACCTATTTCTACTGCTGA 334 115 691 Antisense
ATCGCCCAGTAACTATGACCGTCAT 88 35 735 Antisense
GACCGTCATAGATCTGCAGTGTACA 213 383 751 Antisense
ACAGTTTGCTTGCTCAATTTGCCAC 340 107 773 Antisense
ATTCTGGCTGTGTTTGCATCGAGGA 197 11 883 Antisense
TAGTGCTTATCACAACAACTCCGCC 205 655 923 Antisense
Sequence Source Affymetrix Proprietary Database