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[191127_at] G-protein coupled receptor

Description F42D1.3 /REP_DB=WormBase Gene ID /WP=CE10300 /TR=Q93704 /GB=CAB03091.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster 6grp_high1_10_10 > 01      6grp_total > 08      4grp_total > 39      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 208
1 2 3 4 range
A 262.6
(3)
P 		116.7
(-2.6)
P 		107.4
(-3)
A 		181.2
(-0.1)
P 		155
B 286.6
(3)
P 		123.7
(-1.7)
M 		78.6
(-3)
A 		141.4
(-1.2)
P 		208
C 271.3
(3)
P 		117.1
(-2.7)
P 		110.3
(-3)
A 		180.8
(-0.4)
P 		161
avr 273.5
(3) 		119.2
(-2.3) 		98.8
(-3) 		167.8
(-0.6) 		175

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 205
1 2 3 4 5 6 range
A 233
(3)
P 		117.9
(-0.4)
P 		156.9
(0.8)
P 		125.8
(-0.2)
A 		149.4
(0.5)
A 		28.9
(-3)
A 		204
B 233.6
(3)
P 		150.8
(-1.5)
P 		134.3
(-2.4)
P 		126.8
(-2.8)
P 		134.2
(-2.4)
P 		123.4
(-3)
A 		110
C 199.9
(3)
P 		129.9
(-0.8)
P 		182.7
(2.1)
P 		153.3
(0.5)
M 		88.8
(-3)
A 		91.9
(-2.8)
P 		111
avr 222.2
(3) 		132.9
(-0.8) 		158
(0.3) 		135.3
(-0.7) 		124.1
(-1.2) 		81.4
(-3) 		141
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 95.6
(3)
P 		25.3
(-3)
P 		28.1
(-2.8)
A 		26.5
(-2.9)
P 		70
B 91.4
(3)
P 		30.5
(-2)
M 		18.2
(-3)
A 		30.1
(-2)
P 		73
C 89.8
(3)
P 		33.7
(-2.7)
P 		38.5
(-2.2)
A 		30.5
(-3)
P 		59
avr 92.3
(3) 		29.8
(-2.9) 		28.3
(-3) 		29
(-2.9) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 43
(2.7)
P 		41.9
(2.5)
P 		34.2
(1.3)
P 		31.9
(0.9)
A 		45.1
(3)
A 		7
(-3)
A 		38
B 81.3
(3)
P 		50.2
(-0.8)
P 		32.6
(-3)
P 		33.6
(-2.9)
P 		54.5
(-0.3)
P 		46
(-1.3)
A 		49
C 74.1
(3)
P 		39.6
(-1.6)
P 		46.5
(-0.6)
P 		30.8
(-2.7)
M 		28.7
(-3)
A 		30.8
(-2.7)
P 		45
avr 66.1
(3) 		43.9
(-0.5) 		37.8
(-1.4) 		32.1
(-2.3) 		42.8
(-0.7) 		27.9
(-3) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191127_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17750
Sequence Type Exemplar sequence
Representative Public ID F42D1.3 NCBI
Target Description F42D1.3 /REP_DB=WormBase Gene ID /WP=CE10300 /TR=Q93704 /GB=CAB03091.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078054(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078054 NCBI Caenorhabditis elegans F42D1.3 (F42D1.3) mRNA, complete cds. 11/11 None
GENEFINDER00000036361 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14800086:14804153:1 11/11 None
F42D1.3.1 ENSEMBL cdna:known chromosome:CEL140:X:14800036:14804230:1 gene:F42D1.3 11/11 None
F42D1.3.2 ENSEMBL cdna:known chromosome:CEL140:X:14800038:14804153:1 gene:F42D1.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000036359 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14800110-14804153(+) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor
Ensembl F42D1.3
Entrez Gene 181575 Entrez gene
SwissProt Q93704 EMBL-EBI
WormBase CE31511 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1634888_AT dm
DROSOPHILA_2:1623478_AT dm
DROSGENOME1:144523_AT dm
DROSGENOME1:144522_AT dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03091 Hypothetical protein F42D1.3 [Caenorhabditis elegans] ref|NP_510455.2| F42D1.3 [Caenorhabditis elegans] 0.0
blast CAE63231 Hypothetical protein CBG07592 [Caenorhabditis briggsae] 1.0E-178
blast AAF46037 CG16752-PA [Drosophila melanogaster] ref|NP_572225.1| CG16752-PA [Drosophila melanogaster] gb|AAM12257.1| RE15519p [Drosophila melanogaster] 9.0E-30
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510455.2 7 59-81,94-116,145-167,179-198,247-269,303-325,345-367
F42D1.3.1 7 59-81,94-116,145-167,179-198,247-269,303-325,345-367
F42D1.3.2 7 59-81,94-116,145-167,179-198,247-269,303-325,345-367
GENEFINDER00000036361 7 59-81,94-116,145-167,179-198,247-269,303-325,345-367
Sequence
Target Sequence 
>C. ELEGANS:191127_AT
atatttacttctggacacgtgcgctcggcttcattattttgccaagtttcctacttgtcc
tgctcaatggccttctcattaagggtattagaagagcgcagcggcggaagctgcgattgt
tgagagaaaaacgttccgaagaagctgctcggcaacgagatagcaattcgacaagcctta
tgctagttgctattgtttcaatttttttgattgtaaatttgccgcaggctatatttatgg
gcctgctttgtgtctgtgagacgtttacaattaagattccaatattagaaggaactttcc
ctgccgtgtttcttatcgctagtaatatgatcgttattgctacttatcccatcaattttg
gaatctactgttttatgtcaagcagttttcgacaaactttcaaattgttgttttgtcctg
gcgctagtcaactccaatgcgaacggcgaatcgaagctgcaagtgccgtacattccagtc
gtcgacgttccgacatttgctcgcatttggtgaatgtttgcacaaactctgagggattca
tgcaagtatcccatcattgtctgcacgtcgattatcttgtatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATTTACTTCTGGACACGTGCGCT 213 19 854 Antisense
TTGCCAAGTTTCCTACTTGTCCTGC 375 693 892 Antisense
ATTTATGGGCCTGCTTTGTGTCTGT 364 15 1086 Antisense
TTAGAAGGAACTTTCCCTGCCGTGT 510 679 1138 Antisense
ATCGTTATTGCTACTTATCCCATCA 573 35 1183 Antisense
CCTGGCGCTAGTCAACTCCAATGCG 596 263 1270 Antisense
GAAGCTGCAAGTGCCGTACATTCCA 486 341 1306 Antisense
GTACATTCCAGTCGTCGACGTTCCG 478 459 1321 Antisense
TTCCGACATTTGCTCGCATTTGGTG 299 699 1341 Antisense
GCAAGTATCCCATCATTGTCTGCAC 97 321 1395 Antisense
GTCTGCACGTCGATTATCTTGTATC 614 471 1412 Antisense
Sequence Source Affymetrix Proprietary Database