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[191124_at] 7TM chemoreceptor, srw family

Description F32A7.2 /REP_DB=WormBase Gene ID /WP=CE09843 /TR=P91864 /GB=CAB05502.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster 6grp_total > 82      4grp_total > 28      6grp_cgc > 74      6grp_cgc_sub > 02_03_04_05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 14.4
(-1.3)
A 		5.9
(-2.6)
A 		3.1
(-3)
A 		43.4
(3)
P 		40
B 33.1
(-0.4)
A 		45.4
(3)
A 		28.7
(-1.7)
A 		23.9
(-3)
A 		22
C 39.5
(1)
A 		58.6
(3)
A 		1.5
(-3)
A 		40.2
(1.1)
A 		57
avr 29
(1.2) 		36.6
(3) 		11.1
(-3) 		35.8
(2.8) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 27.6
(0.4)
A 		6.2
(-3)
A 		38.3
(2.2)
P 		15.8
(-1.5)
A 		43.5
(3)
P 		12.2
(-2)
A 		37
B 25.9
(1.4)
A 		28.6
(2.1)
A 		9.2
(-3)
A 		32
(3)
M 		29.1
(2.2)
A 		23.4
(0.7)
A 		23
C 4.1
(-3)
A 		49.6
(3)
M 		14.6
(-1.6)
A 		29.5
(0.3)
A 		10.4
(-2.2)
A 		9.2
(-2.3)
A 		46
avr 19.2
(-1) 		28.1
(3) 		20.7
(-0.4) 		25.8
(2) 		27.7
(2.8) 		14.9
(-3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 5.2
(1.7)
A 		1.3
(-2.5)
A 		0.8
(-3)
A 		6.4
(3)
P 		6
B 10.6
(2.4)
A 		11.2
(3)
A 		6.7
(-1.4)
A 		5.1
(-3)
A 		6
C 13.1
(1.6)
A 		16.9
(3)
A 		0.5
(-3)
A 		6.8
(-0.7)
A 		16
avr 9.6
(2.8) 		9.8
(3) 		2.7
(-3) 		6.1
(-0.1) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 5.1
(-1.4)
A 		2.2
(-3)
A 		8.3
(0.4)
P 		4
(-2)
A 		13.1
(3)
P 		3
(-2.6)
A 		11
B 9
(1.3)
A 		9.5
(1.6)
A 		2.2
(-3)
A 		8.5
(0.9)
M 		11.8
(3)
A 		8.7
(1.1)
A 		10
C 1.5
(-3)
A 		15.1
(3)
M 		3.7
(-2)
A 		5.9
(-1.1)
A 		3.4
(-2.2)
A 		3.1
(-2.3)
A 		14
avr 5.2
(-2.4) 		8.9
(2.4) 		4.7
(-3) 		6.1
(-1.2) 		9.4
(3) 		4.9
(-2.7) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191124_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.979
Sequence Type Exemplar sequence
Representative Public ID F32A7.2 NCBI
Target Description F32A7.2 /REP_DB=WormBase Gene ID /WP=CE09843 /TR=P91864 /GB=CAB05502.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061188(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061188 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-93) (srw-93) mRNA, complete cds. 10/11 None
F32A7.2 ENSEMBL cdna:known chromosome:CEL140:I:14836318:14837712:1 gene:F32A7.2 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011754 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14836248-14837643(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-93
Ensembl F32A7.2
Entrez Gene 185186 Entrez gene
SwissProt P91864 EMBL-EBI
WormBase CE36694 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05502 Hypothetical protein F32A7.2 [Caenorhabditis elegans] ref|NP_493589.2| Serpentine Receptor, class W family member (srw-93) [Caenorhabditis elegans] 1.0E-170
blast AAC78164 Serpentine receptor, class w protein 91 [Caenorhabditis elegans] ref|NP_503480.2| Serpentine Receptor, class W family member (srw-91) [Caenorhabditis elegans] 7.0E-71
blast CAE62424 Hypothetical protein CBG06514 [Caenorhabditis briggsae] 2.0E-62
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493589.2 5 34-56,63-85,203-225,246-268,288-310
F32A7.2 5 34-56,63-85,203-225,246-268,288-310
Sequence
Target Sequence 
>C. ELEGANS:191124_AT
ggtcaattatttgtctcctttgcacaaatatgcctttaaattcaacttatccatattatg
aacatagagtgttggatttctttgcacatggaaatgaattgcctagaagaatgtatcaag
ttattaacggggttctagtcaagatagctccctgtatcgttttacccctgctcaccacgt
tgcttgctattgaactgcgaaaaactgagagaaatcgaatatcatcacgtgtttccacaa
gaaacaagtcgagtttttctgattcatcctttatcattgtgactcttttgatattcatag
cttcactgccaactggcaccgcaacagttttctcattcatctaccctgatctgggatttt
tcttcctacctatgaatcttgacgcggcattacattctgttctggctctgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTCAATTATTTGTCTCCTTTGCAC 162 505 491 Antisense
GAGTGTTGGATTTCTTTGCACATGG 365 401 557 Antisense
AAGATAGCTCCCTGTATCGTTTTAC 289 155 631 Antisense
CTCACCACGTTGCTTGCTATTGAAC 340 229 661 Antisense
TCGAATATCATCACGTGTTTCCACA 428 601 705 Antisense
GATTCATCCTTTATCATTGTGACTC 76 431 751 Antisense
TTCATAGCTTCACTGCCAACTGGCA 171 687 784 Antisense
CTCATTCATCTACCCTGATCTGGGA 291 229 822 Antisense
TGGGATTTTTCTTCCTACCTATGAA 364 553 842 Antisense
CCTACCTATGAATCTTGACGCGGCA 166 269 855 Antisense
CATTACATTCTGTTCTGGCTCTGAA 496 215 878 Antisense
Sequence Source Affymetrix Proprietary Database