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[191123_s_at]

Description R10E11.1 /REP_DB=WormBase Gene ID /WP=CE28069 /GEN=cbp-1 /TR=SW:P34545 /GB=CAA82353.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=bromodomain
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 27      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 60      6grp_total > 27      4grp_total > 39      6grp_highest_sub > De      6grp_cgc > 14      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 548
1 2 3 4 range
A 700.8
(3)
P 		181
(-2.7)
P 		154.7
(-3)
P 		371
(-0.6)
P 		546
B 579.1
(3)
P 		247.2
(-1.7)
P 		153
(-3)
P 		470.2
(1.5)
P 		426
C 628.1
(3)
P 		214.9
(-2.4)
P 		170
(-3)
P 		253
(-1.9)
P 		458
avr 636
(3) 		214.4
(-2.3) 		159.2
(-3) 		364.7
(-0.4) 		477

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 517
1 2 3 4 5 6 range
A 469.1
(3)
P 		461.2
(2.9)
P 		188.9
(-1.9)
P 		124.8
(-3)
P 		185.1
(-1.9)
P 		326.4
(0.5)
P 		344
B 619.4
(3)
P 		393.7
(0.2)
P 		182.5
(-2.3)
P 		233.6
(-1.7)
P 		128.9
(-3)
P 		283.2
(-1.1)
P 		491
C 641.5
(3)
P 		373
(-0.8)
P 		213.1
(-3)
P 		213.6
(-3)
P 		242.9
(-2.6)
P 		250.4
(-2.5)
P 		428
avr 576.7
(3) 		409.3
(0.4) 		194.8
(-2.9) 		190.7
(-2.9) 		185.6
(-3) 		286.7
(-1.4) 		391
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 220
1 2 3 4 range
A 255.2
(3)
P 		39.3
(-3)
P 		40.4
(-3)
P 		54.3
(-2.6)
P 		216
B 184.7
(3)
P 		61
(-2)
P 		35.5
(-3)
P 		100.2
(-0.4)
P 		149
C 207.9
(3)
P 		61.8
(-2.3)
P 		59.2
(-2.4)
P 		42.7
(-3)
P 		165
avr 215.9
(3) 		54
(-2.7) 		45
(-3) 		65.7
(-2.3) 		171

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 206
1 2 3 4 5 6 range
A 86.5
(-0.5)
P 		164
(3)
P 		41.1
(-2.6)
P 		31.7
(-3)
P 		55.9
(-1.9)
P 		79.5
(-0.8)
P 		132
B 215.5
(3)
P 		131.1
(0)
P 		44.3
(-3)
P 		61.9
(-2.4)
P 		52.4
(-2.7)
P 		105.6
(-0.9)
P 		171
C 237.8
(3)
P 		113.8
(-0.8)
P 		54.2
(-2.7)
P 		42.9
(-3)
P 		78.6
(-1.9)
P 		83.8
(-1.7)
P 		195
avr 179.9
(3) 		136.3
(1.1) 		46.5
(-3) 		45.5
(-3) 		62.3
(-2.3) 		89.6
(-1) 		134
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191123_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6375
Sequence Type Exemplar sequence
Representative Public ID R10E11.1 NCBI
Target Description R10E11.1 /REP_DB=WormBase Gene ID /WP=CE28069 /GEN=cbp-1 /TR=SW:P34545 /GB=CAA82353.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=bromodomain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066760(11), NM_066759(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066760 NCBI Caenorhabditis elegans R10E11.1a (bromodomain) mRNA, complete cds. 11/11 None
NM_066759 NCBI Caenorhabditis elegans R10E11.1b (bromodomain) mRNA, complete cds. 11/11 None
GENEFINDER00000016253 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9764860:9773830:1 9/11 None
SNAP00000016236 ENSEMBL cdna:SNAP chromosome:CEL140:III:9766592:9773830:1 10/11 None
R10E11.1a ENSEMBL cdna:known chromosome:CEL140:III:9766410:9774718:1 gene:R10E11.1 11/11 None
R10E11.1b ENSEMBL cdna:known chromosome:CEL140:III:9766592:9774466:1 gene:R10E11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9766587-9774462(+) 99.61 100.0
Public Domain and Genome References
Ensembl R10E11.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA82353 Hypothetical protein R10E11.1a [Caenorhabditis elegans] ref|NP_499161.1| R10E11.1a [Caenorhabditis elegans] 0.0
blast CAD18875 Hypothetical protein R10E11.1b [Caenorhabditis elegans] ref|NP_499160.1| R10E11.1b [Caenorhabditis elegans] sp|P34545|CBP1_CAEEL Protein cbp-1 0.0
blast S60123 hypothetical protein R10E11.1 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR010303 EMBL-EBI Protein of unknown function DUF902 1.6E-33
Pfam IPR003101 EMBL-EBI Coactivator CBP, KIX 6.4E-55
Pfam IPR000433 EMBL-EBI Zn-finger, ZZ type 1.7E-18
Pfam IPR000197 EMBL-EBI TAZ finger 9.0E-57
Pfam IPR000197 EMBL-EBI TAZ finger 1.5E-41
Pfam IPR009255 EMBL-EBI Protein of unknown function DUF906 1.0E-126
Pfam IPR001487 EMBL-EBI Bromodomain 5.5E-39
Pfam IPR010303 EMBL-EBI Protein of unknown function DUF902 1.6E-33
Pfam IPR003101 EMBL-EBI Coactivator CBP, KIX 6.4E-55
Pfam IPR000433 EMBL-EBI Zn-finger, ZZ type 1.7E-18
Pfam IPR000197 EMBL-EBI TAZ finger 1.9E-36
Pfam IPR000197 EMBL-EBI TAZ finger 1.5E-41
Pfam IPR009255 EMBL-EBI Protein of unknown function DUF906 1.0E-126
Pfam IPR001487 EMBL-EBI Bromodomain 5.5E-39
Pfam IPR010303 EMBL-EBI Protein of unknown function DUF902 1.6E-33
Pfam IPR003101 EMBL-EBI Coactivator CBP, KIX 6.4E-55
Pfam IPR000433 EMBL-EBI Zn-finger, ZZ type 1.7E-18
Pfam IPR000197 EMBL-EBI TAZ finger 9.0E-57
Pfam IPR000197 EMBL-EBI TAZ finger 1.5E-41
Pfam IPR009255 EMBL-EBI Protein of unknown function DUF906 1.0E-126
Pfam IPR001487 EMBL-EBI Bromodomain 5.5E-39
Pfam IPR010303 EMBL-EBI Protein of unknown function DUF902 1.6E-33
Pfam IPR003101 EMBL-EBI Coactivator CBP, KIX 6.4E-55
Pfam IPR000433 EMBL-EBI Zn-finger, ZZ type 1.7E-18
Pfam IPR000197 EMBL-EBI TAZ finger 7.0E-36
Pfam IPR000197 EMBL-EBI TAZ finger 7.8E-13
Pfam IPR000197 EMBL-EBI TAZ finger 1.5E-41
Pfam IPR009255 EMBL-EBI Protein of unknown function DUF906 1.0E-126
Pfam IPR001487 EMBL-EBI Bromodomain 5.5E-39
Sequence
Target Sequence 
>C. ELEGANS:191123_S_AT
ttcgattccacattgcaaccgcaaataatgaagatcaattctcgactgaaggcagcgaaa
acggaggaagaacgggaaactgtattttcagaccttaagaagactccacatttgttccat
gcttggcttaggatgcgggaaaatcaaaatttggtgcctaatcgaatgcaaggatattcg
caaatgtcaatgggttcttcgaatcttcaaaacttgcagcagcagcagcttcaacaacag
caagccggtgcgatgcgtggtggtggaggatttgcccctggacaaaacaattctcaacct
cgtgcaccaagtggccagtttgcatcgatgaatccatcaatgcagcagcagtatcctcag
caacaacagggatggcctcaacagcggcagcagaatcctggtgggatgcagcaaaatgct
aatccgtacaatcagttccaaaatcggcaaaatatgatgatgatgccacaacaacaacag
cctcatccatctaacgctggcgatcgttgctcatatttgctcttttttgttttaaatcta
cgcattgattgccctcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCGATTCCACATTGCAACCGCAAA 541 693 5557 Antisense
GATCAATTCTCGACTGAAGGCAGCG 654 421 5589 Antisense
AAGACTCCACATTTGTTCCATGCTT 642 153 5656 Antisense
AAATGTCAATGGGTTCTTCGAATCT 495 119 5738 Antisense
ACAGCAAGCCGGTGCGATGCGTGGT 627 107 5793 Antisense
GAGGATTTGCCCCTGGACAAAACAA 86 403 5822 Antisense
CAAAACAATTCTCAACCTCGTGCAC 332 191 5839 Antisense
CACCAAGTGGCCAGTTTGCATCGAT 699 201 5861 Antisense
AACAGGGATGGCCTCAACAGCGGCA 600 135 5921 Antisense
ACAGCGGCAGCAGAATCCTGGTGGG 270 109 5937 Antisense
AAATCTACGCATTGATTGCCCTCGT 601 117 6090 Antisense
Sequence Source Affymetrix Proprietary Database