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[191122_at] cys- and gln-rich protein

Description F31A3.1 /REP_DB=WormBase Gene ID /WP=CE07158 /TR=Q19919 /GB=AAB36856.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=cys- and gln-rich protein
Cluster 6grp_total > 53      4grp_total > 33      6grp_cgc > 90      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 5.6
(-1.1)
A 		9.7
(3)
A 		9.1
(2.4)
A 		3.7
(-3)
A 		6
B 4.3
(-2.6)
A 		3.9
(-3)
A 		8.4
(2)
A 		9.3
(3)
A 		5
C 2.9
(-3)
A 		8.1
(0.7)
A 		3.2
(-2.8)
A 		11.3
(3)
A 		8
avr 4.3
(-3) 		7.2
(1.6) 		6.9
(1.1) 		8.1
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 5.5
(-2.4)
A 		3.4
(-3)
A 		26.1
(3)
A 		5.8
(-2.4)
A 		7.5
(-1.9)
A 		4.4
(-2.7)
A 		23
B 3.2
(-2.3)
A 		2.6
(-2.9)
A 		2.5
(-3)
A 		4.2
(-1.2)
A 		8.3
(3)
A 		2.5
(-3)
A 		6
C 4.7
(-0.8)
A 		2.8
(-3)
A 		4
(-1.6)
A 		3.8
(-1.8)
A 		8
(3)
A 		3.2
(-2.5)
A 		5
avr 4.5
(-1.8) 		2.9
(-3) 		10.9
(3) 		4.6
(-1.7) 		7.9
(0.8) 		3.4
(-2.6) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 2
(1.7)
A 		2.1
(2.1)
A 		2.4
(3)
A 		0.5
(-3)
A 		2
B 1.4
(-0.6)
A 		1
(-3)
A 		1.9
(2.4)
A 		2
(3)
A 		1
C 1
(-3)
A 		2.3
(3)
A 		1.1
(-2.5)
A 		1.9
(1.2)
A 		1
avr 1.5
(-3) 		1.8
(3) 		1.8
(3) 		1.5
(-3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 1
(-3)
A 		1.2
(-2.7)
A 		5.7
(3)
A 		1.5
(-2.4)
A 		2.3
(-1.3)
A 		1.1
(-2.9)
A 		5
B 1.1
(-1.9)
A 		0.9
(-2.4)
A 		0.6
(-3)
A 		1.1
(-1.9)
A 		3.4
(3)
A 		0.9
(-2.4)
A 		3
C 1.7
(-0)
A 		0.9
(-2.7)
A 		1
(-2.3)
A 		0.8
(-3)
A 		2.6
(3)
A 		1.1
(-2)
A 		2
avr 1.3
(-2) 		1
(-3) 		2.4
(1.7) 		1.1
(-2.7) 		2.8
(3) 		1
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191122_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17952
Sequence Type Exemplar sequence
Representative Public ID F31A3.1 NCBI
Target Description F31A3.1 /REP_DB=WormBase Gene ID /WP=CE07158 /TR=Q19919 /GB=AAB36856.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=cys- and gln-rich protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078438(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078438 NCBI Caenorhabditis elegans Activated in Blocked Unfolded protein response family member (abu-3) (abu-3) mRNA, complete cds. 11/11 None
SNAP00000018624 ENSEMBL cdna:SNAP chromosome:CEL140:X:17553329:17554359:1 10/11 None
F31A3.1 ENSEMBL cdna:known chromosome:CEL140:X:17553329:17554359:1 gene:F31A3.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000018629 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17553327-17554358(+) 96.57 100.0
Public Domain and Genome References
Gene Title cys- and gln-rich protein
Gene Symbol abu-3
Ensembl F31A3.1
Entrez Gene 185133 Entrez gene
SwissProt Q19919 EMBL-EBI
WormBase CE07158 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB36856 Activated in blocked unfolded protein response protein 3 [Caenorhabditis elegans] ref|NP_510839.1| Activated in Blocked Unfolded protein response family member (abu-3) [Caenorhabditis elegans] 2.0E-20
blast AAB36856 Activated in blocked unfolded protein response protein 3 [Caenorhabditis elegans] ref|NP_510839.1| Activated in Blocked Unfolded protein response family member (abu-3) [Caenorhabditis elegans] 4.0E-20
blast CAA94868 Hypothetical protein AC3.4 [Caenorhabditis elegans] ref|NP_505668.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-2) [Caenorhabditis elegans] 8.0E-16
blast CAA94867 Hypothetical protein AC3.3 [Caenorhabditis elegans] ref|NP_505667.1| Activated in Blocked Unfolded protein response family member (abu-1) [Caenorhabditis elegans] 8.0E-16
blast CAA94868 Hypothetical protein AC3.4 [Caenorhabditis elegans] ref|NP_505668.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-2) [Caenorhabditis elegans] 1.0E-15
blast CAA94867 Hypothetical protein AC3.3 [Caenorhabditis elegans] ref|NP_505667.1| Activated in Blocked Unfolded protein response family member (abu-1) [Caenorhabditis elegans] 1.0E-15
Sequence
Target Sequence 
>C. ELEGANS:191122_AT
atgccaatcctcatgccagcaaaattgtcagacttcttcctgtagtgcttcagctacgtt
ggctccagttcaacatgtaccacaatgccaacagcagtgtgctcctcaatgccaacagcc
agcagctccacagtgccaacagtgtcagaatacttgccaacaatctgctccagtttgcca
gcaacagtgcgccccgcaatgtcagcaacaattcgccccagcctgtcaacaatgccagaa
ttcgtgccaacaaactcaacagtgccagcagcaatgcactccgcagtgccaacaaccatc
cacaccacagtgccaacaatgccaatcagcctgccaagctccagccactgctgctccaca
aatttctctcaatcttgaagcttcagtctctcaatctgctcaatgtgagccacaatgtca
gcaatcatgccaacagcaatgtgtacagcaacaacaatcaatgcaacaatgtgcatcagc
ttgcaccaaatcgtgctctcaatcgtgctctcagccagctcaaatgccatgccagaccca
aacattaaactcctgctcctgtcagcaaaactattccccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCCAATCCTCATGCCAGCAAAAT 419 41 129 Antisense
CTTCTTCCTGTAGTGCTTCAGCTAC 601 221 161 Antisense
TTCAGCTACGTTGGCTCCAGTTCAA 628 687 177 Antisense
GTTCAACATGTACCACAATGCCAAC 421 445 196 Antisense
AACAATGCCAGAATTCGTGCCAACA 221 135 356 Antisense
AGTGCCAACAATGCCAATCAGCCTG 324 61 437 Antisense
CTCAATCTTGAAGCTTCAGTCTCTC 686 227 496 Antisense
GCATCAGCTTGCACCAAATCGTGCT 426 309 601 Antisense
ACCAAATCGTGCTCTCAATCGTGCT 380 83 613 Antisense
GACCCAAACATTAAACTCCTGCTCC 437 381 663 Antisense
TCCTGTCAGCAAAACTATTCCCCAT 466 593 685 Antisense
Sequence Source Affymetrix Proprietary Database