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[191121_at] 7TM chemoreceptor, sri family

Description B0454.3 /REP_DB=WormBase Gene ID /WP=CE25742 /GEN=sri-28 /TR=O17171 /GB=AAB70941.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 50      4grp_total > 27      6grp_cgc > 91      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 27.8
(-3)
A 		40.1
(-1.4)
A 		36.6
(-1.9)
A 		75.1
(3)
A 		47
B 7.8
(-3)
A 		63.6
(3)
A 		30.7
(-0.5)
A 		29.2
(-0.7)
A 		56
C 52.1
(0.3)
A 		43.2
(-0.3)
A 		7.6
(-3)
A 		87.5
(3)
P 		80
avr 29.2
(-2.4) 		49
(0.7) 		25
(-3) 		63.9
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 44.5
(3)
A 		20.3
(-3)
A 		36.1
(0.9)
A 		36.5
(1)
A 		32.7
(0.1)
A 		27.8
(-1.1)
A 		24
B 43.4
(0.8)
A 		25.2
(-1.8)
A 		58.9
(3)
A 		17
(-3)
A 		24.2
(-2)
A 		30.2
(-1.1)
A 		42
C 38.6
(-0.8)
A 		34.8
(-1.4)
A 		37.3
(-1)
A 		59.8
(3)
A 		26
(-3)
A 		37.7
(-0.9)
A 		34
avr 42.2
(2.3) 		26.8
(-3) 		44.1
(3) 		37.8
(0.8) 		27.6
(-2.7) 		31.9
(-1.2) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 10.1
(0.7)
A 		8.7
(-3)
A 		9.6
(-0.7)
A 		11
(3)
A 		2
B 2.5
(-3)
A 		15.7
(3)
A 		7.1
(-0.9)
A 		6.2
(-1.3)
A 		13
C 17.3
(3)
A 		12.4
(1)
A 		2.6
(-3)
A 		14.8
(2)
P 		15
avr 10
(0.7) 		12.3
(3) 		6.4
(-3) 		10.7
(1.4) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 8.2
(-0.3)
A 		7.2
(-2.2)
A 		7.9
(-0.9)
A 		9.3
(1.8)
A 		9.9
(3)
A 		6.8
(-3)
A 		3
B 15.1
(3)
A 		8.4
(-0.8)
A 		14.3
(2.5)
A 		4.5
(-3)
A 		9.8
(0)
A 		11.3
(0.8)
A 		11
C 14.3
(3)
A 		10.6
(-0.8)
A 		9.5
(-1.9)
A 		12
(0.7)
A 		8.4
(-3)
A 		12.6
(1.3)
A 		6
avr 12.5
(3) 		8.7
(-2.8) 		10.6
(0.1) 		8.6
(-3) 		9.4
(-1.8) 		10.2
(-0.5) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191121_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4075
Sequence Type Exemplar sequence
Representative Public ID B0454.3 NCBI
Target Description B0454.3 /REP_DB=WormBase Gene ID /WP=CE25742 /GEN=sri-28 /TR=O17171 /GB=AAB70941.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062032(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062032 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-28) (sri-28) mRNA, complete cds. 11/11 None
SNAP00000034454 ENSEMBL cdna:SNAP chromosome:CEL140:II:3048673:3050348:1 11/11 None
B0454.3 ENSEMBL cdna:known chromosome:CEL140:II:3048673:3050348:1 gene:B0454.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3048671-3050347(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-28
Ensembl B0454.3
Entrez Gene 191903 Entrez gene
SwissProt O17171 EMBL-EBI
WormBase CE25742 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB70941 Serpentine receptor, class i protein 28 [Caenorhabditis elegans] ref|NP_494433.1| Serpentine Receptor, class I family member (sri-28) [Caenorhabditis elegans] 0.0
blast AAB70941 Serpentine receptor, class i protein 28 [Caenorhabditis elegans] ref|NP_494433.1| Serpentine Receptor, class I family member (sri-28) [Caenorhabditis elegans] 1.0E-164
blast AAK71872 Serpentine receptor, class i protein 29 [Caenorhabditis elegans] ref|NP_494431.1| Serpentine Receptor, class I family member (sri-29) [Caenorhabditis elegans] 1.0E-104
blast H88087 protein B0454.4 [imported] - Caenorhabditis elegans 1.0E-101
blast AAK71872 Serpentine receptor, class i protein 29 [Caenorhabditis elegans] ref|NP_494431.1| Serpentine Receptor, class I family member (sri-29) [Caenorhabditis elegans] 3.0E-88
blast H88087 protein B0454.4 [imported] - Caenorhabditis elegans 9.0E-86
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.9E-80
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 6.6E-57
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494433.1 7 20-42,63-85,95-117,137-159,198-220,247-269,279-301
B0454.3 7 20-42,63-85,95-117,137-159,198-220,247-269,279-301
SNAP00000034454 7 15-33,40-62,72-94,114-136,175-197,224-246,256-278
Sequence
Target Sequence 
>C. ELEGANS:191121_AT
tacatattttgcctatcattctcctgccttatatctttctcaattttcatcgcagacgct
accaaggaagatcagtataaggaactgcaggagcactacccggagtacgtggacaaattc
cgggagcttccagaatttgtggtctacgtgataaactggcggatgaaggtgttctttgtg
ctgactgggtttgcaacgctgaagactacagtgatggtatccttcctagttcttaggatg
ttcaatgctctgtcagctgtgaagagtcgtctgtcgaagaatacaatagcaaagcataag
attacgctgaggagcttggtcatgcagttcatggtgaccccgatctcctacgtcccagcg
ttcatgcttcttgtggtaacgctattcccaactgaatactcacaacagatctcctggtac
tctatgatgatcgccactatgcactcgattcttaattctcttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACATATTTTGCCTATCATTCTCCT 285 645 436 Antisense
CTGCCTTATATCTTTCTCAATTTTC 214 237 459 Antisense
TTTTCATCGCAGACGCTACCAAGGA 399 615 479 Antisense
GTGCTGACTGGGTTTGCAACGCTGA 518 477 613 Antisense
AGTGATGGTATCCTTCCTAGTTCTT 23 59 645 Antisense
TAGGATGTTCAATGCTCTGTCAGCT 21 655 669 Antisense
GAGGAGCTTGGTCATGCAGTTCATG 378 403 744 Antisense
CAGCGTTCATGCTTCTTGTGGTAAC 671 201 791 Antisense
ACAACAGATCTCCTGGTACTCTATG 142 111 837 Antisense
TATGATGATCGCCACTATGCACTCG 216 655 858 Antisense
TGCACTCGATTCTTAATTCTCTTGT 327 577 875 Antisense
Sequence Source Affymetrix Proprietary Database