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[191120_at]

Description F55A11.6 /REP_DB=WormBase Gene ID /WP=CE11115 /TR=P90887 /GB=CAA96662.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=glutathione S-transferase
Cluster 6grp_total > 97      4grp_total > 29      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 69.1
(3)
A 		51.4
(1.1)
A 		13.9
(-3)
A 		54.9
(1.5)
A 		55
B 95.4
(3)
A 		80.6
(1)
A 		51.6
(-3)
A 		71.5
(-0.3)
A 		44
C 65.7
(-1.2)
A 		51.8
(-2.3)
A 		43.4
(-3)
A 		119.2
(3)
A 		76
avr 76.7
(2.3) 		61.3
(0.3) 		36.3
(-3) 		81.9
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 189
1 2 3 4 5 6 range
A 73.4
(-1.9)
A 		56.6
(-2.5)
A 		41.8
(-3)
A 		71.6
(-2)
A 		131.6
(0.1)
A 		217.1
(3)
P 		175
B 54
(-3)
A 		57.2
(-2.8)
A 		56.7
(-2.9)
A 		85
(-1.4)
A 		145.5
(1.8)
A 		167.4
(3)
P 		113
C 28.1
(-3)
A 		92.2
(-0.1)
A 		67.7
(-1.2)
A 		81.5
(-0.6)
A 		118.2
(1)
A 		161.9
(3)
P 		134
avr 51.8
(-3) 		68.7
(-2.2) 		55.4
(-2.8) 		79.4
(-1.7) 		131.8
(0.7) 		182.1
(3) 		130
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 25.2
(3)
A 		11.2
(-0.9)
A 		3.6
(-3)
A 		8
(-1.8)
A 		22
B 30.4
(3)
A 		19.9
(-0.4)
A 		12
(-3)
A 		15.2
(-2)
A 		18
C 21.8
(3)
A 		14.9
(-3)
A 		15.1
(-2.8)
A 		20.1
(1.5)
A 		7
avr 25.8
(3) 		15.3
(-1) 		10.2
(-3) 		14.4
(-1.4) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 13.5
(-2.4)
A 		20.1
(-1.5)
A 		9.1
(-3)
A 		18.2
(-1.8)
A 		39.7
(1.2)
A 		52.8
(3)
P 		44
B 18.8
(-2.4)
A 		19
(-2.4)
A 		13.8
(-3)
A 		22.5
(-1.9)
A 		59.1
(2.6)
A 		62.4
(3)
P 		49
C 10.4
(-3)
A 		28.1
(-0.6)
A 		17.2
(-2.1)
A 		16.4
(-2.2)
A 		38.2
(0.8)
A 		54.2
(3)
P 		44
avr 14.2
(-2.9) 		22.4
(-1.7) 		13.4
(-3) 		19
(-2.2) 		45.7
(1.5) 		56.5
(3) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191120_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13230
Sequence Type Exemplar sequence
Representative Public ID F55A11.6 NCBI
Target Description F55A11.6 /REP_DB=WormBase Gene ID /WP=CE11115 /TR=P90887 /GB=CAA96662.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=glutathione S-transferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028801(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028801 NCBI Caenorhabditis elegans F55A11.11 (F55A11.11) mRNA, complete cds. 11/11 None
SNAP00000030959 ENSEMBL cdna:SNAP chromosome:CEL140:V:11786018:11787151:1 11/11 None
GENEFINDER00000030967 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11786018:11787151:1 11/11 None
F55A11.11 ENSEMBL cdna:known chromosome:CEL140:V:11784401:11787151:1 gene:F55A11.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11783711-11787151(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55A11.11
Entrez Gene 3565838 Entrez gene
SwissProt Q86D20 EMBL-EBI
WormBase CE33795 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD89724 Hypothetical protein F55A11.11 [Caenorhabditis elegans] ref|NP_001023972.1| F55A11.11 [Caenorhabditis elegans] 1.0E-180
blast CAE75298 Hypothetical protein CBG23268 [Caenorhabditis briggsae] 1.0E-159
blast EAA08157 ENSANGP00000003062 [Anopheles gambiae str. PEST] ref|XP_312476.2| ENSANGP00000003062 [Anopheles gambiae str. PEST] 4.0E-17
Sequence
Target Sequence 
>C. ELEGANS:191120_AT
tactcttcaaacggctgctgcaatcgccaaatcgactggtgcccggattctcgttgagcc
aggacttttggagccaatggaatggtatcgtcgagctggtgcaaaacaattgccagattt
tttcgatgaagcgctggatttcccacaagttgataaaacttacaagccaatcttctcgat
gcacgaatttaccagcatgttcggagcaaaaagccaggagcagtgtattcaacgtatcat
gctagttgtgaaaaatatttgtgtcattttccgtgatactcctgctctaattatcggcca
tgcagttacaatggacgtagcatcaaaaatcggacaacatggtgacatgttgagtagtgg
acatactgaagatttgacatcctacgaagattcgacgtatccatcagatcccagtggaca
agcagccaaattggaacttggtgtccgttatcctcctctgagtgttatgggacttgttcg
taataatgatgctccgccgcatgtgctcaagacagttcccgatttgattccgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTCTTCAAACGGCTGCTGCAATC 202 647 1329 Antisense
GCAATCGCCAAATCGACTGGTGCCC 522 321 1348 Antisense
TGAAGCGCTGGATTTCCCACAAGTT 88 575 1455 Antisense
CTTACAAGCCAATCTTCTCGATGCA 498 221 1487 Antisense
TTGTGTCATTTTCCGTGATACTCCT 55 709 1587 Antisense
TACTCCTGCTCTAATTATCGGCCAT 106 647 1605 Antisense
AGATTCGACGTATCCATCAGATCCC 117 65 1716 Antisense
ATTGGAACTTGGTGTCCGTTATCCT 48 3 1758 Antisense
CCGTTATCCTCCTCTGAGTGTTATG 628 263 1773 Antisense
TTCGTAATAATGATGCTCCGCCGCA 661 693 1805 Antisense
AAGACAGTTCCCGATTTGATTCCGC 191 153 1837 Antisense
Sequence Source Affymetrix Proprietary Database