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[191118_at] 7TM chemoreceptor, srh family

Description T03D3.4 /REP_DB=WormBase Gene ID /WP=CE25098 /GEN=srh-36 /TR=O16978 /GB=AAG24194.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 01      4grp_total > 03      6grp_cgc > 53      6grp_cgc_sub > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 195
1 2 3 4 range
A 31.3
(-1.2)
A 		6.6
(-3)
A 		7.5
(-2.9)
A 		89.5
(3)
P 		83
B 47.9
(-1.8)
A 		47.7
(-1.8)
A 		9.7
(-3)
A 		193.5
(3)
M 		184
C 47.3
(-2.3)
A 		38.4
(-2.6)
A 		25.5
(-3)
A 		201.6
(3)
M 		176
avr 42.2
(-1.9) 		30.9
(-2.3) 		14.2
(-3) 		161.5
(3) 		147

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 8.4
(-2.7)
A 		46.1
(3)
A 		10.8
(-2.4)
A 		6.7
(-3)
A 		26.6
(0)
A 		29.9
(0.5)
A 		39
B 32.2
(2.9)
A 		32.7
(3)
A 		17.2
(-0.1)
A 		2.3
(-3)
A 		22
(0.9)
A 		11.8
(-1.1)
A 		30
C 20.5
(-2.1)
A 		69.4
(3)
A 		12.2
(-3)
A 		63.9
(2.4)
A 		47.4
(0.7)
A 		22.7
(-1.9)
A 		57
avr 20.4
(-1.8) 		49.4
(3) 		13.4
(-3) 		24.3
(-1.2) 		32
(0.1) 		21.5
(-1.7) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 11.4
(2.1)
A 		1.4
(-3)
A 		1.9
(-2.7)
A 		13.1
(3)
P 		12
B 15.3
(-1)
A 		11.8
(-1.5)
A 		2.2
(-3)
A 		41.2
(3)
M 		39
C 15.6
(-1.4)
A 		11.1
(-2.5)
A 		8.9
(-3)
A 		34
(3)
M 		25
avr 14.1
(-0.7) 		8.1
(-2.1) 		4.3
(-3) 		29.4
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 1.6
(-3)
A 		16.4
(3)
A 		2.4
(-2.7)
A 		1.7
(-3)
A 		8
(-0.4)
A 		7.3
(-0.7)
A 		15
B 11.2
(3)
A 		10.9
(2.8)
A 		4.2
(-1)
A 		0.6
(-3)
A 		8.9
(1.7)
A 		4.4
(-0.8)
A 		11
C 7.6
(-1.5)
A 		21.2
(3)
A 		3.1
(-3)
A 		12.8
(0.2)
A 		15.4
(1.1)
A 		7.6
(-1.5)
A 		18
avr 6.8
(-1.3) 		16.2
(3) 		3.2
(-3) 		5
(-2.2) 		10.8
(0.5) 		6.4
(-1.5) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191118_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15847
Sequence Type Exemplar sequence
Representative Public ID T03D3.4 NCBI
Target Description T03D3.4 /REP_DB=WormBase Gene ID /WP=CE25098 /GEN=srh-36 /TR=O16978 /GB=AAG24194.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071363(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071363 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-36) (srh-36) mRNA, complete cds. 11/11 None
SNAP00000008134 ENSEMBL cdna:SNAP chromosome:CEL140:V:2819408:2821495:-1 11/11 None
GENEFINDER00000008147 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2818752:2822048:-1 9/11 None
T03D3.4 ENSEMBL cdna:known chromosome:CEL140:V:2819408:2821495:-1 gene:T03D3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2819407-2821495(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-36
Ensembl T03D3.4
Entrez Gene 191855 Entrez gene
SwissProt O16978 EMBL-EBI
WormBase CE25098 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503764 Serpentine Receptor, class H family member (srh-36) [Caenorhabditis elegans] gb|AAG24194.1| Serpentine receptor, class h protein 36 [Caenorhabditis elegans] 0.0
blast T32206 hypothetical protein T03D3.4 - Caenorhabditis elegans 1.0E-173
blast NP_503793 Serpentine Receptor, class H family member (srh-38) [Caenorhabditis elegans] gb|AAG23978.2| Serpentine receptor, class h protein 38 [Caenorhabditis elegans] 1.0E-122
blast T32171 hypothetical protein C31B8.11 - Caenorhabditis elegans 1.0E-122
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503764.1 7 20-38,51-73,93-115,136-158,204-226,249-271,291-313
T03D3.4 7 20-38,51-73,93-115,136-158,204-226,249-271,291-313
SNAP00000008134 7 20-38,51-73,93-115,136-158,204-226,249-271,291-313
GENEFINDER00000008147 4 197-219,262-284,306-328,338-360
Sequence
Target Sequence 
>C. ELEGANS:191118_AT
atacctaattgtggctatcctcggattctgggtgactccaatgatgattttccaacttcc
ggaacaaaattctgcgaaactaaaagtcatgatgattgaacagttctacccagattgctt
gtggtctccaactgcaattattgtgacttcggcggaaacattttttgagaatttcttgtg
tgttttaattattgtaaattattgctcaattggtctagcaatctatatatctgcgaaaat
agcgttttgggttttatcgaaaagaatggagacaaaatctgacgctactaagaaaatgca
caagaagttcaatgatcggacaattttccagacattccttttctttgccttctgctgcat
cccattttcggttttattcatcacgattctactcgatttctacattcctggaataacata
cttcgtcgactttctctctgaaaatcatccaaccgtgtgtctcatctccttatttttgta
ctacgacccttaccagtactttttcctagaattgataggatttcgagctgcggctgctaa
acctcggttgtcatcgattccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATACCTAATTGTGGCTATCCTCGGA 495 23 435 Antisense
TATCCTCGGATTCTGGGTGACTCCA 101 659 450 Antisense
GAACAGTTCTACCCAGATTGCTTGT 576 351 532 Antisense
GATTGCTTGTGGTCTCCAACTGCAA 590 433 547 Antisense
TTTTCCAGACATTCCTTTTCTTTGC 425 677 758 Antisense
GCATCCCATTTTCGGTTTTATTCAT 365 303 791 Antisense
GATTCTACTCGATTTCTACATTCCT 674 431 819 Antisense
TAACATACTTCGTCGACTTTCTCTC 661 639 848 Antisense
GAAAATCATCCAACCGTGTGTCTCA 516 353 874 Antisense
GATTTCGAGCTGCGGCTGCTAAACC 162 427 953 Antisense
TAAACCTCGGTTGTCATCGATTCCG 221 637 972 Antisense
Sequence Source Affymetrix Proprietary Database