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[191116_at] WD domain, G-beta repeat

Description Y18D10A.9 /REP_DB=WormBase Gene ID /WP=CE21405 /TR=Q9XW12 /GB=CAA22322.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=WD domain, G-beta repeat
Cluster 6grp_high1_10_10 > 39      4grp_highest_8_8 > 37      4grp_high_8_8 > 01      6grp_total > 39      4grp_total > 07      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 176
1 2 3 4 range
A 244
(-0)
P 		181.3
(-3)
P 		206.8
(-1.8)
P 		307.6
(3)
P 		126
B 186.5
(-3)
P 		212.8
(-1.4)
P 		210.6
(-1.5)
P 		285.3
(3)
P 		99
C 302.1
(3)
P 		131.2
(-3)
P 		182.4
(-1.2)
P 		204.9
(-0.4)
P 		171
avr 244.2
(1.6) 		175.1
(-3) 		199.9
(-1.4) 		265.9
(3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 180
1 2 3 4 5 6 range
A 121.8
(0.3)
A 		103.6
(-1.5)
P 		138.7
(2.1)
P 		89.1
(-3)
A 		148
(3)
P 		139.7
(2.2)
P 		59
B 109.6
(-0.3)
P 		157.4
(2.5)
P 		62.2
(-3)
P 		141.1
(1.6)
P 		165.7
(3)
P 		147.4
(1.9)
P 		104
C 221.6
(3)
P 		135.7
(0.1)
P 		41.7
(-3)
A 		91.4
(-1.3)
P 		108.7
(-0.8)
M 		126.8
(-0.2)
P 		180
avr 151
(3) 		132.2
(1.4) 		80.9
(-3) 		107.2
(-0.7) 		140.8
(2.1) 		138
(1.9) 		70
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 88.8
(3)
P 		39.3
(-3)
P 		54.1
(-1.2)
P 		45
(-2.3)
P 		50
B 59.5
(2.4)
P 		52.5
(-1.2)
P 		48.8
(-3)
P 		60.8
(3)
P 		12
C 100
(3)
P 		37.7
(-2.7)
P 		63.6
(-0.3)
P 		34.6
(-3)
P 		65
avr 82.8
(3) 		43.2
(-3) 		55.5
(-1.1) 		46.8
(-2.5) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 22.5
(-3)
A 		36.8
(0.9)
P 		30.2
(-0.9)
P 		22.6
(-3)
A 		44.7
(3)
P 		34
(0.1)
P 		22
B 38.1
(-0.4)
P 		52.4
(1.3)
P 		15.1
(-3)
P 		37.4
(-0.4)
P 		67.3
(3)
P 		55
(1.6)
P 		52
C 82.1
(3)
P 		41.4
(-0.4)
P 		10.6
(-3)
A 		18.4
(-2.3)
P 		35.2
(-0.9)
M 		42.4
(-0.3)
P 		72
avr 47.6
(2.7) 		43.5
(1.9) 		18.6
(-3) 		26.1
(-1.5) 		49.1
(3) 		43.8
(2) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191116_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.435
Sequence Type Exemplar sequence
Representative Public ID Y18D10A.9 NCBI
Target Description Y18D10A.9 /REP_DB=WormBase Gene ID /WP=CE21405 /TR=Q9XW12 /GB=CAA22322.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=WD domain, G-beta repeat
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060846(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060846 NCBI Caenorhabditis elegans Y18D10A.9 (Y18D10A.9) mRNA, complete cds. 11/11 None
SNAP00000000414 ENSEMBL cdna:SNAP chromosome:CEL140:I:12852613:12866383:-1 11/11 None
GENEFINDER00000000444 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12861315:12866383:-1 11/11 None
Y18D10A.9 ENSEMBL cdna:known chromosome:CEL140:I:12861315:12866383:-1 gene:Y18D10A.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12861245-12866314(-) 100.0 100.0
Public Domain and Genome References
Gene Title WD domain, G-beta repeat
Ensembl Y18D10A.9
Entrez Gene 173152 Entrez gene
SwissProt Q9XW12 EMBL-EBI
WormBase CE34506 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22322 Hypothetical protein Y18D10A.9 [Caenorhabditis elegans] ref|NP_493247.2| Y18D10A.9 [Caenorhabditis elegans] 0.0
blast CAE63504 Hypothetical protein CBG07981 [Caenorhabditis briggsae] 1.0E-163
blast CAE63504 Hypothetical protein CBG07981 [Caenorhabditis briggsae] 1.0E-147
blast CAA22322 Hypothetical protein Y18D10A.9 [Caenorhabditis elegans] ref|NP_493247.2| Y18D10A.9 [Caenorhabditis elegans] 1.0E-134
blast CAE63504 Hypothetical protein CBG07981 [Caenorhabditis briggsae] 1.0E-112
blast AAH44534 Wdr39 protein [Danio rerio] 2.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.0E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.8E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 5.0E-9
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.6E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.6E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.0E-4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.0E-9
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.2E-4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.0E-4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.0E-9
Sequence
Target Sequence 
>C. ELEGANS:191116_AT
gacgagtttttggccacatgtagcagagataaaagtgtctggttttggcaacaggacgag
gacgaggatttcagcgtttcatcgattctacagccacacacacaggacgtgaaacaagtc
gcctggcatccaactgaagatcttctcgtctcatgcagctacgactcatcaatcagattc
taccgattcgacggcgaagactgggtaacacaacagaaaatcgacggatgtcacgtggga
actcttttcgttcgtgagaacattggctccaaatctgctgatcaagacacgtggaagtct
gtggcacgttatgatgtggaaaatacacgatggccgttgtattcggtggcctggaattct
acgaatgacgtcattgccaccggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGAGTTTTTGGCCACATGTAGCA 202 377 379 Antisense
TCAGCGTTTCATCGATTCTACAGCC 388 623 449 Antisense
CTACAGCCACACACACAGGACGTGA 368 227 466 Antisense
GACGTGAAACAAGTCGCCTGGCATC 3 379 484 Antisense
GCCTGGCATCCAACTGAAGATCTTC 363 283 499 Antisense
TCGTCTCATGCAGCTACGACTCATC 252 605 524 Antisense
TCAGATTCTACCGATTCGACGGCGA 336 623 551 Antisense
GGATGTCACGTGGGAACTCTTTTCG 379 505 604 Antisense
ACATTGGCTCCAAATCTGCTGATCA 380 105 638 Antisense
GATGGCCGTTGTATTCGGTGGCCTG 620 405 707 Antisense
TACGAATGACGTCATTGCCACCGGT 69 649 738 Antisense
Sequence Source Affymetrix Proprietary Database