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[191115_s_at] 7TM chemoreceptor, srd family /// 7TM chemoreceptor, srd family

Description E04F6.1 /REP_DB=WormBase Gene ID /WP=CE20648 /GEN=srd-59 /TR=Q19061 /GB=AAA68361.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 16      4grp_total > 25      6grp_cgc > 03      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 13.6
(-3)
A 		47.2
(1.6)
A 		31.7
(-0.5)
A 		57.4
(3)
A 		44
B 3.9
(-3)
A 		13.1
(-0.2)
A 		23.7
(3)
A 		12.3
(-0.5)
A 		20
C 3.7
(-3)
A 		33.8
(1.1)
A 		20.6
(-0.7)
A 		48.2
(3)
A 		45
avr 7.1
(-3) 		31.4
(1.5) 		25.3
(0.4) 		39.3
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 34.3
(3)
A 		13.1
(-1.2)
A 		4.1
(-3)
A 		13.3
(-1.2)
A 		16.1
(-0.6)
A 		4.7
(-2.9)
A 		30
B 14
(0.7)
A 		19.6
(2.7)
A 		9.6
(-0.9)
A 		7.8
(-1.5)
A 		3.6
(-3)
A 		20.4
(3)
A 		17
C 19.4
(2.6)
A 		20.5
(3)
A 		12.6
(0.1)
A 		3.9
(-3)
A 		15.2
(1.1)
A 		5.4
(-2.5)
A 		17
avr 22.6
(3) 		17.7
(0.9) 		8.8
(-2.8) 		8.3
(-3) 		11.6
(-1.6) 		10.2
(-2.2) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 4.9
(-3)
A 		10.2
(3)
A 		8.3
(0.8)
A 		8.4
(1)
A 		5
B 1.2
(-3)
A 		3.2
(-0.2)
A 		5.5
(3)
A 		2.6
(-1)
A 		4
C 1.2
(-3)
A 		9.7
(3)
A 		7.2
(1.2)
A 		8.1
(1.9)
A 		9
avr 2.4
(-3) 		7.7
(3) 		7
(2.2) 		6.4
(1.5) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 6.3
(3)
A 		4.7
(1.2)
A 		0.9
(-3)
A 		3.4
(-0.2)
A 		4.9
(1.4)
A 		1.1
(-2.8)
A 		5
B 4.9
(0.3)
A 		6.5
(1.9)
A 		2.3
(-2.2)
A 		2.1
(-2.4)
A 		1.5
(-3)
A 		7.6
(3)
A 		6
C 7.2
(3)
A 		6.3
(2.2)
A 		3.2
(-0.8)
A 		0.8
(-3)
A 		4.9
(0.8)
A 		1.8
(-2.1)
A 		6
avr 6.1
(3) 		5.8
(2.6) 		2.1
(-3) 		2.1
(-3) 		3.8
(-0.5) 		3.5
(-0.9) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191115_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4990
Sequence Type Exemplar sequence
Representative Public ID E04F6.1 NCBI
Target Description E04F6.1 /REP_DB=WormBase Gene ID /WP=CE20648 /GEN=srd-59 /TR=Q19061 /GB=AAA68361.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063097(11), NM_063098(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063097 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-58) (srd-58) mRNA, complete cds. 11/11 None
NM_063098 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-59) (srd-59) mRNA, complete cds. 11/11 None
SNAP00000032895 ENSEMBL cdna:SNAP chromosome:CEL140:II:7203842:7205525:-1 11/11 None
SNAP00000032896 ENSEMBL cdna:SNAP chromosome:CEL140:II:7205619:7206823:1 11/11 None
GENEFINDER00000032907 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7203842:7204982:-1 11/11 None
GENEFINDER00000032910 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7205946:7206823:1 11/11 None
E04F6.13 ENSEMBL cdna:known chromosome:CEL140:II:7203842:7204982:-1 gene:E04F6.13 11/11 None
E04F6.1 ENSEMBL cdna:known chromosome:CEL140:II:7205619:7206823:1 gene:E04F6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7205614-7206819(+) 100.0 100.0
chrII:7203837-7204978(-) 92.64 92.64
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srd family
7TM chemoreceptor, srd family
Gene Symbol srd-59
srd-58
Ensembl E04F6.13
E04F6.1
Entrez Gene 191819 Entrez gene
191820 Entrez gene
SwissProt Q19061 EMBL-EBI
Q95QP0 EMBL-EBI
WormBase CE20648 Wormbase
CE20649 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68293 Serpentine receptor, class d (delta) protein 58 [Caenorhabditis elegans] ref|NP_495498.1| Serpentine Receptor, class D (delta) family member (srd-58) [Caenorhabditis elegans] 0.0
blast AAA68361 Serpentine receptor, class d (delta) protein 59 [Caenorhabditis elegans] ref|NP_495499.1| Serpentine Receptor, class D (delta) family member (srd-59) [Caenorhabditis elegans] sp|Q19061|SRD59_CAEEL Serpentine receptor class delta-59 (Protein srd-59) 0.0
blast AAA68361 Serpentine receptor, class d (delta) protein 59 [Caenorhabditis elegans] ref|NP_495499.1| Serpentine Receptor, class D (delta) family member (srd-59) [Caenorhabditis elegans] sp|Q19061|SRD59_CAEEL Serpentine receptor class delta-59 (Protein srd-59) 1.0E-176
blast AAK68293 Serpentine receptor, class d (delta) protein 58 [Caenorhabditis elegans] ref|NP_495498.1| Serpentine Receptor, class D (delta) family member (srd-58) [Caenorhabditis elegans] 1.0E-176
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495498.1 7 15-34,47-66,99-121,133-152,189-211,236-258,273-295
NP_495499.1 8 12-34,44-66,73-95,99-121,133-152,189-211,236-258,273-295
E04F6.13 7 15-34,47-66,99-121,133-152,189-211,236-258,273-295
E04F6.1 8 12-34,44-66,73-95,99-121,133-152,189-211,236-258,273-295
SNAP00000032895 6 27-46,66-88,95-117,155-177,202-224,239-261
SNAP00000032896 8 12-34,44-66,73-95,99-121,133-152,189-211,236-258,273-295
GENEFINDER00000032907 7 15-34,47-66,99-121,133-152,189-211,236-258,273-295
GENEFINDER00000032910 5 10-27,39-58,95-117,142-164,179-201
Sequence
Target Sequence 
>C. ELEGANS:191115_S_AT
tataacctgtccatttactatccgtactcgggattttcaaatgctggaagtcctcagttt
ctgtcagccacccttctcctatcaattggtgcatacggaattccgatcggctgtctcatt
ctgactcgaaaagttttaattttgattcgttatcatagtcatatgtcggaaagaactaaa
aaacaagcacaaactctaattcatggattaatcgttcaatcaatgcttccattcatttcc
tacattccatcattttctggttatatttatactcaatctactggaagagaactcttgatt
tgtgaacacctgatattagtgtcatctgcattcccagctctccttgatccattcatctcg
ttttatttcattgttccataccgacaggcaattattgaatgggtacttccaaaacgtcaa
cagcgaatcaccacagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATAACCTGTCCATTTACTATCCGT 146 653 523 Antisense
TGCTGGAAGTCCTCAGTTTCTGTCA 668 579 564 Antisense
CCACCCTTCTCCTATCAATTGGTGC 545 273 590 Antisense
TACGGAATTCCGATCGGCTGTCTCA 457 647 616 Antisense
GGCTGTCTCATTCTGACTCGAAAAG 458 539 631 Antisense
AATCGTTCAATCAATGCTTCCATTC 479 169 732 Antisense
ATATTAGTGTCATCTGCATTCCCAG 403 19 835 Antisense
GATCCATTCATCTCGTTTTATTTCA 9 417 868 Antisense
TTCATTGTTCCATACCGACAGGCAA 226 687 889 Antisense
TGGGTACTTCCAAAACGTCAACAGC 660 553 922 Antisense
AACGTCAACAGCGAATCACCACAGT 174 145 935 Antisense
Sequence Source Affymetrix Proprietary Database