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[191114_at] 7TM chemoreceptor, srj family

Description T03D3.2 /REP_DB=WormBase Gene ID /WP=CE13070 /GEN=srj-50 /TR=O16981 /GB=AAG24191.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 47      4grp_total > 02      6grp_cgc > 16      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 45.1
(-0.5)
A 		5
(-3)
A 		34.7
(-1.2)
A 		103
(3)
P 		98
B 45.9
(0.4)
A 		41.3
(-0.2)
A 		19.6
(-3)
A 		65.6
(3)
A 		46
C 17.3
(-3)
A 		42.4
(-1.5)
A 		46.8
(-1.2)
A 		116.4
(3)
P 		99
avr 36.1
(-2.4) 		29.6
(-3) 		33.7
(-2.6) 		95
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 56.4
(1.7)
A 		6.5
(-3)
A 		44.9
(0.6)
A 		16.7
(-2)
A 		44.8
(0.6)
A 		69.8
(3)
A 		63
B 56
(3)
A 		47.1
(1.7)
A 		15.9
(-3)
A 		49.4
(2)
A 		35.7
(-0)
A 		45.1
(1.4)
A 		40
C 18.5
(-1.8)
A 		76.7
(3)
P 		35.7
(-0.4)
A 		18.4
(-1.8)
A 		4
(-3)
A 		19.4
(-1.7)
A 		73
avr 43.6
(2.6) 		43.4
(2.5) 		32.2
(-1.6) 		28.2
(-3) 		28.2
(-3) 		44.8
(3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 16.4
(3)
A 		1.1
(-3)
A 		9.1
(0.1)
A 		15.1
(2.5)
P 		15
B 14.6
(3)
A 		10.2
(0.4)
A 		4.5
(-3)
A 		14
(2.6)
A 		10
C 5.7
(-3)
A 		12.2
(-0.2)
A 		16.3
(1.6)
A 		19.6
(3)
P 		14
avr 12.2
(0.1) 		7.8
(-3) 		10
(-1.4) 		16.2
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 10.4
(0.3)
A 		2.3
(-3)
A 		9.8
(0.1)
A 		4.2
(-2.2)
A 		13.5
(1.6)
A 		17
(3)
A 		15
B 19.5
(3)
A 		15.7
(1.5)
A 		3.9
(-3)
A 		13.1
(0.5)
A 		14.5
(1.1)
A 		16.8
(2)
A 		16
C 6.8
(-1.5)
A 		23.4
(3)
P 		9.1
(-0.9)
A 		3.7
(-2.3)
A 		1.3
(-3)
A 		6.5
(-1.6)
A 		22
avr 12.2
(1.6) 		13.8
(3) 		7.6
(-2.5) 		7
(-3) 		9.8
(-0.5) 		13.4
(2.6) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191114_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15012
Sequence Type Exemplar sequence
Representative Public ID T03D3.2 NCBI
Target Description T03D3.2 /REP_DB=WormBase Gene ID /WP=CE13070 /GEN=srj-50 /TR=O16981 /GB=AAG24191.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071366(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071366 NCBI Caenorhabditis elegans Serpentine Receptor, class J family member (srj-50) (srj-50) mRNA, complete cds. 11/11 None
GENEFINDER00000008144 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2830838:2834748:1 11/11 None
T03D3.2 ENSEMBL cdna:known chromosome:CEL140:V:2832793:2834748:1 gene:T03D3.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008136 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2832792-2834748(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srj family
Gene Symbol srj-50
Ensembl T03D3.2
Entrez Gene 191951 Entrez gene
SwissProt O16981 EMBL-EBI
WormBase CE13070 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503767 Serpentine Receptor, class J family member (srj-50) [Caenorhabditis elegans] gb|AAG24191.1| Serpentine receptor, class j protein 50 [Caenorhabditis elegans] 0.0
blast NP_503766 Serpentine Receptor, class W family member (srw-2) [Caenorhabditis elegans] gb|AAG24187.2| Serpentine receptor, class w protein 2 [Caenorhabditis elegans] 0.0
blast NP_503767 Serpentine Receptor, class J family member (srj-50) [Caenorhabditis elegans] gb|AAG24191.1| Serpentine receptor, class j protein 50 [Caenorhabditis elegans] 1.0E-133
blast NP_503772 Serpentine Receptor, class J family member (srj-57) [Caenorhabditis elegans] gb|AAG24190.1| Serpentine receptor, class j protein 57 [Caenorhabditis elegans] 1.0E-123
blast AAK18951 Serpentine receptor, class j protein 54 [Caenorhabditis elegans] ref|NP_503774.1| Serpentine Receptor, class J family member (srj-54) [Caenorhabditis elegans] 1.0E-116
blast CAE65515 Hypothetical protein CBG10489 [Caenorhabditis briggsae] 1.0E-102
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503767.1 7 10-30,43-65,91-113,126-148,199-221,246-268,283-305
T03D3.2 7 10-30,43-65,91-113,126-148,199-221,246-268,283-305
GENEFINDER00000008144 10 57-79,119-136,148-170,213-235,261-283,298-320,411-433,453-475,496-518,533-555
Sequence
Target Sequence 
>C. ELEGANS:191114_AT
gcagcatctttcctgattttcggattgttttttggagtgtggtacgcaatttgctatcat
ttagccagggtaaacatagagattcgtcagtatatacgagaagatttccgagaaacttat
ggaacagattcaaagaattacaacatgattggtgtcttgtttcaggaaggatcagaagaa
acaacatttcgatcatggattgttattattctatggacttcgttgtccgttgcgtcactc
atttcgtttattatcctcgcaactttgattatgtgcaaactcaaaaaaacagcaatgcac
gttagccaggcaacatcgaaatttcaatttgaactgctgagagctttgatcgtgcaaaca
attgtgccaatttgcatcagttactccccatgtctcctatgttggtatagtccaatgttt
ggagttcaattgccaagagaggttaactatttcgaagtcagtgcactgggaatcttttca
tttgttgatccgctggcaatcattttttgtctaccaccacttcgtaaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGCATCTTTCCTGATTTTCGGAT 501 313 406 Antisense
TATGGACTTCGTTGTCCGTTGCGTC 403 653 617 Antisense
GTTGCGTCACTCATTTCGTTTATTA 628 439 634 Antisense
TTCGTTTATTATCCTCGCAACTTTG 496 695 648 Antisense
GCAATGCACGTTAGCCAGGCAACAT 160 323 697 Antisense
GTGCCAATTTGCATCAGTTACTCCC 666 477 769 Antisense
TCCCCATGTCTCCTATGTTGGTATA 153 597 790 Antisense
GTCAGTGCACTGGGAATCTTTTCAT 198 467 862 Antisense
TCTTTTCATTTGTTGATCCGCTGGC 481 615 878 Antisense
GATCCGCTGGCAATCATTTTTTGTC 12 417 892 Antisense
TTTGTCTACCACCACTTCGTAAAAG 570 661 911 Antisense
Sequence Source Affymetrix Proprietary Database