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[191113_s_at] 7TM chemoreceptor, srd family /// 7TM chemoreceptor, srd family

Description F07C4.8 /REP_DB=WormBase Gene ID /WP=CE09207 /GEN=srd-31 /TR=P91211 /GB=AAG24040.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 93      4grp_total > 10      6grp_cgc > 99      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 36.6
(-2.6)
P 		33.4
(-3)
A 		38
(-2.5)
A 		83.7
(3)
P 		50
B 25.8
(-1.8)
A 		44.7
(2.4)
P 		20.6
(-3)
A 		47.5
(3)
P 		27
C 27.1
(-3)
A 		32.8
(-2.5)
A 		31.8
(-2.6)
A 		99.2
(3)
P 		72
avr 29.8
(-3) 		37
(-2.1) 		30.1
(-3) 		76.8
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 56.2
(2.3)
A 		26.3
(-0.8)
A 		46.2
(1.3)
P 		32.9
(-0.1)
A 		62.6
(3)
P 		5.1
(-3)
A 		58
B 30.6
(2.4)
A 		3.5
(-2.8)
A 		12.5
(-1.1)
A 		2.6
(-3)
A 		30.8
(2.5)
A 		33.6
(3)
A 		31
C 15.7
(-3)
A 		29.5
(-0.3)
A 		26.8
(-0.8)
A 		27.2
(-0.7)
A 		46.1
(3)
P 		34.5
(0.7)
A 		30
avr 34.2
(0.2) 		19.8
(-3) 		28.5
(-1) 		20.9
(-2.8) 		46.5
(3) 		24.4
(-2) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 13.3
(3)
P 		7.3
(-3)
A 		9.9
(-0.4)
A 		12.2
(1.9)
P 		6
B 8.2
(0.3)
A 		11
(3)
P 		4.8
(-3)
A 		10.1
(2.1)
P 		6
C 9
(-3)
A 		9.4
(-2.7)
A 		11.1
(-1.4)
A 		16.7
(3)
P 		8
avr 10.2
(-0.8) 		9.2
(-2.2) 		8.6
(-3) 		13
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 10.4
(0.1)
A 		9.4
(-0.2)
A 		10.1
(0)
P 		8.4
(-0.6)
A 		18.9
(3)
P 		1.2
(-3)
A 		18
B 10.6
(2)
A 		1.2
(-2.7)
A 		3
(-1.8)
A 		0.7
(-3)
A 		12.5
(3)
A 		12.5
(3)
A 		12
C 5.8
(-2.8)
A 		9
(-0.8)
A 		6.8
(-2.2)
A 		5.5
(-3)
A 		14.9
(3)
P 		11.5
(0.8)
A 		9
avr 8.9
(-0.7) 		6.5
(-2.1) 		6.6
(-2) 		4.9
(-3) 		15.4
(3) 		8.4
(-1) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191113_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12245
Sequence Type Exemplar sequence
Representative Public ID F07C4.8 NCBI
Target Description F07C4.8 /REP_DB=WormBase Gene ID /WP=CE09207 /GEN=srd-31 /TR=P91211 /GB=AAG24040.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072571(11), NM_072573(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072571 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-30) (srd-30) mRNA, complete cds. 11/11 A 
NM_072573 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-31) (srd-31) mRNA, complete cds. 11/11 A 
SNAP00000003389 ENSEMBL cdna:SNAP chromosome:CEL140:V:7632985:7633890:1 11/11 None
SNAP00000003391 ENSEMBL cdna:SNAP chromosome:CEL140:V:7635991:7637286:-1 11/11 None
GENEFINDER00000003403 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7632459:7633890:1 11/11 None
GENEFINDER00000003411 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7635991:7637286:-1 11/11 None
F07C4.5 ENSEMBL cdna:known chromosome:CEL140:V:7632396:7633890:1 gene:F07C4.5 11/11 A 
F07C4.8 ENSEMBL cdna:known chromosome:CEL140:V:7635991:7637349:-1 gene:F07C4.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7635991-7637350(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srd family
7TM chemoreceptor, srd family
Gene Symbol srd-30
srd-31
Ensembl F07C4.5
F07C4.8
Entrez Gene 191813 Entrez gene
191814 Entrez gene
SwissProt P91209 EMBL-EBI
P91211 EMBL-EBI
WormBase CE09204 Wormbase
CE09207 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504972 Serpentine Receptor, class D (delta) family member (srd-30) [Caenorhabditis elegans] gb|AAG24039.1| Serpentine receptor, class d (delta) protein 30 [Caenorhabditis elegans] sp|P91209|SRD30_CAEEL Serpentine receptor class delta-30 (Protein srd-30) 0.0
blast NP_504974 Serpentine Receptor, class D (delta) family member (srd-31) [Caenorhabditis elegans] gb|AAG24040.1| Serpentine receptor, class d (delta) protein 31 [Caenorhabditis elegans] sp|P91211|SRD31_CAEEL Serpentine receptor class delta-31 (Protein srd-31) 1.0E-180
blast NP_504972 Serpentine Receptor, class D (delta) family member (srd-30) [Caenorhabditis elegans] gb|AAG24039.1| Serpentine receptor, class d (delta) protein 30 [Caenorhabditis elegans] sp|P91209|SRD30_CAEEL Serpentine receptor class delta-30 (Protein srd-30) 1.0E-174
blast NP_504974 Serpentine Receptor, class D (delta) family member (srd-31) [Caenorhabditis elegans] gb|AAG24040.1| Serpentine receptor, class d (delta) protein 31 [Caenorhabditis elegans] sp|P91211|SRD31_CAEEL Serpentine receptor class delta-31 (Protein srd-31) 1.0E-168
blast NP_504972 Serpentine Receptor, class D (delta) family member (srd-30) [Caenorhabditis elegans] gb|AAG24039.1| Serpentine receptor, class d (delta) protein 30 [Caenorhabditis elegans] sp|P91209|SRD30_CAEEL Serpentine receptor class delta-30 (Protein srd-30) 1.0E-152
blast NP_504974 Serpentine Receptor, class D (delta) family member (srd-31) [Caenorhabditis elegans] gb|AAG24040.1| Serpentine receptor, class d (delta) protein 31 [Caenorhabditis elegans] sp|P91211|SRD31_CAEEL Serpentine receptor class delta-31 (Protein srd-31) 1.0E-141
blast NP_504972 Serpentine Receptor, class D (delta) family member (srd-30) [Caenorhabditis elegans] gb|AAG24039.1| Serpentine receptor, class d (delta) protein 30 [Caenorhabditis elegans] sp|P91209|SRD30_CAEEL Serpentine receptor class delta-30 (Protein srd-30) 1.0E-141
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504972.1 7 5-27,48-70,85-107,123-145,174-196,224-246,256-278
NP_504974.1 7 5-27,48-70,85-107,123-145,172-194,222-244,254-276
F07C4.5 7 5-27,48-70,85-107,123-145,174-196,224-246,256-278
F07C4.8 7 5-27,48-70,85-107,123-145,172-194,222-244,254-276
SNAP00000003389 5 40-62,75-97,126-148,176-198,208-230
SNAP00000003391 5 67-89,102-124,151-173,201-223,233-255
GENEFINDER00000003403 5 67-89,102-124,153-175,203-225,235-257
GENEFINDER00000003411 5 67-89,102-124,151-173,201-223,233-255
Sequence
Target Sequence 
>C. ELEGANS:191113_S_AT
tctcatcactcaactattcatcactgcattcttggtcatcgtggcttacatttggattaa
ggagacgctctgcagctatgcaacaaaaatgggtgcaatcaaaaaagatgtaaaaaattt
taataaacgacttgtcaaggtcatcaactttcaagtgttcctcccgtcattcatctttct
cggagtgatcacttttgcatccatgttcactggcaaaatcggctatgagtatgcccaata
cgccatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCATCACTCAACTATTCATCACT 589 611 537 Antisense
ATCACTCAACTATTCATCACTGCAT 110 29 541 Antisense
CTCAACTATTCATCACTGCATTCTT 601 227 545 Antisense
ACTATTCATCACTGCATTCTTGGTC 196 103 549 Antisense
CCCGTCATTCATCTTTCTCGGAGTG 147 261 699 Antisense
GTCATTCATCTTTCTCGGAGTGATC 441 467 702 Antisense
TCATCTTTCTCGGAGTGATCACTTT 384 621 707 Antisense
CGGAGTGATCACTTTTGCATCCATG 451 243 717 Antisense
GAGTGATCACTTTTGCATCCATGTT 600 401 719 Antisense
GCTATGAGTATGCCCAATACGCCAT 632 301 758 Antisense
TATGAGTATGCCCAATACGCCATCT 33 657 760 Antisense
Sequence Source Affymetrix Proprietary Database