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[191112_at] 7TM chemoreceptor, srd family

Description F07C4.8 /REP_DB=WormBase Gene ID /WP=CE09207 /GEN=srd-31 /TR=P91211 /GB=AAG24040.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 94      4grp_total > 37      6grp_cgc > 88      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 77.1
(3)
A 		37.1
(-3)
A 		52.7
(-0.7)
A 		56.3
(-0.1)
A 		40
B 30.5
(-0.6)
A 		70.4
(3)
A 		4.2
(-3)
A 		7.2
(-2.7)
A 		66
C 75.2
(3)
A 		64.9
(0.5)
A 		50.2
(-3)
A 		70.3
(1.8)
A 		25
avr 60.9
(3) 		57.5
(2.2) 		35.7
(-3) 		44.6
(-0.9) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 6.1
(-3)
A 		16.3
(-2)
A 		48.7
(1.3)
A 		42.1
(0.7)
A 		53.2
(1.8)
A 		64.9
(3)
A 		59
B 37.1
(0.5)
A 		30.7
(-0.2)
A 		5.7
(-3)
A 		18.4
(-1.6)
A 		60.1
(3)
A 		20.2
(-1.4)
A 		54
C 23.2
(-3)
A 		41.8
(-0.8)
A 		22.9
(-3)
A 		74.7
(3)
A 		54.3
(0.6)
A 		32.6
(-1.9)
A 		52
avr 22.1
(-3) 		29.6
(-1.7) 		25.8
(-2.3) 		45.1
(1.1) 		55.9
(3) 		39.2
(0) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 28.1
(3)
A 		8.1
(-3)
A 		13.8
(-1.3)
A 		8.2
(-3)
A 		20
B 9.7
(0.2)
A 		17.4
(3)
A 		1
(-3)
A 		1.5
(-2.8)
A 		16
C 24.9
(3)
A 		18.6
(0.1)
A 		17.5
(-0.4)
A 		11.8
(-3)
A 		13
avr 20.9
(3) 		14.7
(0.3) 		10.8
(-1.4) 		7.2
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 1.1
(-3)
A 		5.8
(-1.1)
A 		10.6
(0.8)
A 		10.7
(0.8)
A 		16.1
(3)
A 		15.8
(2.9)
A 		15
B 12.9
(0)
A 		10.2
(-0.7)
A 		1.4
(-3)
A 		4.9
(-2.1)
A 		24.4
(3)
A 		7.5
(-1.4)
A 		23
C 8.6
(-1.6)
A 		12.7
(0.5)
A 		5.8
(-3)
A 		15
(1.7)
A 		17.6
(3)
A 		10.9
(-0.4)
A 		12
avr 7.5
(-2.3) 		9.6
(-1.4) 		5.9
(-3) 		10.2
(-1.1) 		19.4
(3) 		11.4
(-0.6) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191112_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12245
Sequence Type Exemplar sequence
Representative Public ID F07C4.8 NCBI
Target Description F07C4.8 /REP_DB=WormBase Gene ID /WP=CE09207 /GEN=srd-31 /TR=P91211 /GB=AAG24040.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072573(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072573 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-31) (srd-31) mRNA, complete cds. 11/11 A 
SNAP00000003391 ENSEMBL cdna:SNAP chromosome:CEL140:V:7635991:7637286:-1 11/11 None
GENEFINDER00000003411 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7635991:7637286:-1 11/11 None
F07C4.8 ENSEMBL cdna:known chromosome:CEL140:V:7635991:7637349:-1 gene:F07C4.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7635991-7637350(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srd family
Gene Symbol srd-31
Ensembl F07C4.8
Entrez Gene 191814 Entrez gene
SwissProt P91211 EMBL-EBI
WormBase CE09207 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504974 Serpentine Receptor, class D (delta) family member (srd-31) [Caenorhabditis elegans] gb|AAG24040.1| Serpentine receptor, class d (delta) protein 31 [Caenorhabditis elegans] sp|P91211|SRD31_CAEEL Serpentine receptor class delta-31 (Protein srd-31) 1.0E-180
blast NP_504974 Serpentine Receptor, class D (delta) family member (srd-31) [Caenorhabditis elegans] gb|AAG24040.1| Serpentine receptor, class d (delta) protein 31 [Caenorhabditis elegans] sp|P91211|SRD31_CAEEL Serpentine receptor class delta-31 (Protein srd-31) 1.0E-168
blast NP_504972 Serpentine Receptor, class D (delta) family member (srd-30) [Caenorhabditis elegans] gb|AAG24039.1| Serpentine receptor, class d (delta) protein 30 [Caenorhabditis elegans] sp|P91209|SRD30_CAEEL Serpentine receptor class delta-30 (Protein srd-30) 1.0E-141
blast NP_504972 Serpentine Receptor, class D (delta) family member (srd-30) [Caenorhabditis elegans] gb|AAG24039.1| Serpentine receptor, class d (delta) protein 30 [Caenorhabditis elegans] sp|P91209|SRD30_CAEEL Serpentine receptor class delta-30 (Protein srd-30) 1.0E-133
blast NP_504975 Serpentine Receptor, class D (delta) family member (srd-29) [Caenorhabditis elegans] gb|AAG24045.1| Serpentine receptor, class d (delta) protein 29 [Caenorhabditis elegans] 1.0E-128
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504974.1 7 5-27,48-70,85-107,123-145,172-194,222-244,254-276
F07C4.8 7 5-27,48-70,85-107,123-145,172-194,222-244,254-276
SNAP00000003391 5 67-89,102-124,151-173,201-223,233-255
GENEFINDER00000003411 5 67-89,102-124,151-173,201-223,233-255
Sequence
Target Sequence 
>C. ELEGANS:191112_AT
tccgccagccttctatcaagaagcttgtatttgttgcattctgcctgtcgattccatcca
ttattcacatggtagtgtggtttagcatttacgatccaaacgaagcatcaacatatctgc
cactgtttggatcgtgtgatatggtgttaagtggtaaaatcgtttactggtctgcaatca
ctctcatcactcaactattcatcactgcattcttggtcatcgtggcttacatttggatta
aggagacgctctgcagctatgcaacaaaaatgggtgcaatcaaaaaagatgtaaaaaatt
ttaataaacgacttgtcaaggtcatcaactttcaagtgttcctcccgtcattcatctttc
tcggagtgatcacttttgcatccatgttcactggcaaaatcggctatgagtatgcccaat
acgccatctccgtgatcttcatgttctctcccattatctccccattctcgtacattctat
ttgtcccccactacaaaaatgtaatcactgggaaagtgaaaaatccgaaatcaaaaccga
caaagtgtaatccaccaataagtactaccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCGCCAGCCTTCTATCAAGAAGCT 675 595 356 Antisense
TATTTGTTGCATTCTGCCTGTCGAT 268 661 383 Antisense
CCTGTCGATTCCATCCATTATTCAC 243 267 399 Antisense
TAGTGTGGTTTAGCATTTACGATCC 614 603 428 Antisense
GAAGCATCAACATATCTGCCACTGT 464 341 457 Antisense
ATCTGCCACTGTTTGGATCGTGTGA 36 35 470 Antisense
AGACGCTCTGCAGCTATGCAACAAA 613 69 599 Antisense
AAACGACTTGTCAAGGTCATCAACT 355 127 661 Antisense
ATGTTCACTGGCAAAATCGGCTATG 414 47 739 Antisense
TCTATTTGTCCCCCACTACAAAAAT 119 615 831 Antisense
GTAATCCACCAATAAGTACTACCAG 530 461 902 Antisense
Sequence Source Affymetrix Proprietary Database