[Home] | [Total List]

[191110_at] 7TM chemoreceptor, sri family

Description ZC239.8 /REP_DB=WormBase Gene ID /WP=CE15124 /GEN=sri-51 /TR=P91551 /GB=AAB37948.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 32      4grp_total > 17      6grp_cgc > 70      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 7.7
(-2.2)
A 		2.8
(-3)
A 		11.8
(-1.6)
A 		41.3
(3)
A 		39
B 3.6
(-3)
A 		18.4
(3)
A 		12.5
(0.6)
A 		5.5
(-2.2)
A 		15
C 4.9
(-3)
A 		13.7
(2.2)
A 		5.2
(-2.8)
A 		15.1
(3)
A 		10
avr 5.4
(-3) 		11.6
(-0.6) 		9.8
(-1.3) 		20.6
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 21.3
(2.4)
A 		4.3
(-2.3)
A 		1.6
(-3)
A 		3.1
(-2.6)
A 		23.6
(3)
A 		2.3
(-2.8)
A 		22
B 16.1
(1)
A 		21.7
(2.7)
A 		22.7
(3)
A 		3
(-2.9)
A 		2.5
(-3)
A 		3.8
(-2.6)
A 		20
C 3.3
(-2.6)
A 		6.3
(-1.9)
A 		18.4
(1.2)
A 		25.7
(3)
A 		1.8
(-3)
A 		6.6
(-1.8)
A 		24
avr 13.6
(2.6) 		10.8
(1) 		14.2
(3) 		10.6
(0.8) 		9.3
(0.1) 		4.2
(-3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 2.8
(-0.6)
A 		0.6
(-3)
A 		3.1
(-0.2)
A 		6
(3)
A 		5
B 1.2
(-3)
A 		4.5
(3)
A 		2.9
(0.1)
A 		1.2
(-3)
A 		3
C 1.6
(-3)
A 		3.9
(3)
A 		1.8
(-2.5)
A 		2.5
(-0.7)
A 		2
avr 1.9
(-3) 		3
(2.1) 		2.6
(0.2) 		3.2
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 3.9
(0.1)
A 		1.5
(-2)
A 		0.4
(-3)
A 		0.8
(-2.6)
A 		7.1
(3)
A 		0.5
(-2.9)
A 		7
B 5.6
(1.5)
A 		7.2
(3)
A 		5.5
(1.4)
A 		0.8
(-3)
A 		1
(-2.8)
A 		1.4
(-2.4)
A 		6
C 1.2
(-2.2)
A 		1.9
(-1.3)
A 		4.7
(2.3)
A 		5.2
(3)
A 		0.6
(-3)
A 		2.2
(-0.9)
A 		5
avr 3.6
(3) 		3.5
(2.7) 		3.5
(2.7) 		2.3
(-0.5) 		2.9
(1.1) 		1.4
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191110_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5256
Sequence Type Exemplar sequence
Representative Public ID ZC239.8 NCBI
Target Description ZC239.8 /REP_DB=WormBase Gene ID /WP=CE15124 /GEN=sri-51 /TR=P91551 /GB=AAB37948.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062068(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062068 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-51) (sri-51) mRNA, complete cds. 11/11 None
GENEFINDER00000024303 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3192419:3200901:-1 11/11 None
ZC239.8 ENSEMBL cdna:known chromosome:CEL140:II:3197608:3199093:-1 gene:ZC239.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024287 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3197606-3199092(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-51
Ensembl ZC239.8
Entrez Gene 191921 Entrez gene
SwissProt P91551 EMBL-EBI
WormBase CE15124 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37948 Serpentine receptor, class i protein 51 [Caenorhabditis elegans] ref|NP_494469.1| Serpentine Receptor, class I family member (sri-51) [Caenorhabditis elegans] 0.0
blast NP_494324 Guanylyl CYclase family member (gcy-21) [Caenorhabditis elegans] gb|AAB66169.1| Guanylyl cyclase protein 21 [Caenorhabditis elegans] 0.0
blast AAB37946 Guanylyl cyclase protein 15 [Caenorhabditis elegans] ref|NP_494468.1| Guanylyl CYclase family member (gcy-15) [Caenorhabditis elegans] 0.0
blast CAE72387 Hypothetical protein CBG19543 [Caenorhabditis briggsae] 0.0
blast AAB37950 Serpentine receptor, class i protein 53 [Caenorhabditis elegans] ref|NP_494471.2| Serpentine Receptor, class I family member (sri-53) [Caenorhabditis elegans] 1.0E-153
blast T32072 hypothetical protein F22E5.5 - Caenorhabditis elegans 1.0E-116
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 7.9E-73
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-80
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 4.4E-70
Pfam IPR000719 EMBL-EBI Protein kinase 3.6E-8
Pfam IPR000719 EMBL-EBI Protein kinase 6.2E-5
Pfam IPR001054 EMBL-EBI Guanylate cyclase 4.3E-85
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494469.1 8 13-35,45-63,70-89,94-113,134-156,189-211,246-268,273-295
ZC239.8 8 13-35,45-63,70-89,94-113,134-156,189-211,246-268,273-295
GENEFINDER00000024303 16 10-32,45-64,91-113,134-156,189-211,241-263,273-295,363-385,395-413,420-439,444-463,484-506,539-561,596-618,623-645,1128-1150
Sequence
Target Sequence 
>C. ELEGANS:191110_AT
agcatctgatatctgagctcggccataatatattccgagcttgtgtgacaatttggccta
ttttcactttttcgctattctgcgcagctgcagtgaatagggaggagcagatggattatg
tgagagagcattatccggggtacgcctcagaattcgctcaactaaaaaactttgcgatct
accggatgaacatttggatgacaatttccgcaattctattcatctgggcgttcattgtat
tcggttccatcaccttttacaccacattcgacatgtttcaaatgctaaatggagtacaga
aaaagatttcgataaggaattataaccgtgaaaaagctgttgtacggagtttggtagccc
agctgattgcctctaccataatcgcggttcctggcttcgctttcctagcctgtgcattct
gggccacaggtgatttgagaactatcatcgaaattatcattgtattgtttttgctacgtg
gctcaatccattcagttatcctaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCATCTGATATCTGAGCTCGGCCA 220 77 386 Antisense
CTATTTTCACTTTTTCGCTATTCTG 130 225 443 Antisense
TTCGCTATTCTGCGCAGCTGCAGTG 185 693 456 Antisense
AGAGAGCATTATCCGGGGTACGCCT 326 69 508 Antisense
TACGCCTCAGAATTCGCTCAACTAA 464 649 526 Antisense
TTTCCGCAATTCTATTCATCTGGGC 19 671 590 Antisense
GTACGGAGTTTGGTAGCCCAGCTGA 330 457 727 Antisense
CTTTCCTAGCCTGTGCATTCTGGGC 75 219 785 Antisense
GTGCATTCTGGGCCACAGGTGATTT 84 481 797 Antisense
TTGTTTTTGCTACGTGGCTCAATCC 601 705 850 Antisense
GGCTCAATCCATTCAGTTATCCTAA 336 539 865 Antisense
Sequence Source Affymetrix Proprietary Database