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[191109_at]

Description Y39A3B.5 /REP_DB=WormBase Gene ID /WP=CE21646 /TR=Q9N515 /GB=AAF60516.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=7 transmembrane receptor
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 19      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 70      6grp_total > 29      4grp_total > 23      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 316
1 2 3 4 range
A 478.7
(3)
P 		216.4
(-2.8)
P 		205
(-3)
P 		431.8
(2)
P 		274
B 520.5
(3)
P 		311.9
(-1.4)
P 		236
(-3)
P 		347
(-0.7)
P 		285
C 475.6
(3)
P 		248
(-2.1)
P 		205.3
(-3)
P 		455
(2.5)
P 		270
avr 491.6
(3) 		258.8
(-2.1) 		215.4
(-3) 		411.3
(1.3) 		276

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 298
1 2 3 4 5 6 range
A 407.3
(3)
P 		221.2
(-0.8)
P 		116.6
(-3)
P 		245.4
(-0.3)
P 		304.7
(0.9)
P 		272.3
(0.2)
P 		291
B 357.5
(1.5)
P 		414.7
(3)
P 		185.3
(-3)
P 		323.3
(0.6)
P 		329.2
(0.8)
P 		226.2
(-1.9)
P 		229
C 280.2
(0)
P 		374.9
(3)
P 		292.4
(0.4)
P 		184.6
(-3)
P 		297.8
(0.6)
P 		215.2
(-2)
P 		190
avr 348.3
(3) 		336.9
(2.5) 		198.1
(-3) 		251.1
(-0.9) 		310.6
(1.5) 		237.9
(-1.4) 		150
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 174.3
(3)
P 		47
(-3)
P 		53.6
(-2.7)
P 		63.2
(-2.2)
P 		127
B 166
(3)
P 		77
(-1.8)
P 		54.7
(-3)
P 		73.9
(-2)
P 		111
C 157.5
(3)
P 		71.3
(-3)
P 		71.6
(-3)
P 		76.7
(-2.6)
P 		86
avr 165.9
(3) 		65.1
(-2.7) 		60
(-3) 		71.3
(-2.4) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 75.1
(1.5)
P 		78.7
(1.8)
P 		25.4
(-3)
P 		62.2
(0.3)
P 		91.9
(3)
P 		66.3
(0.7)
P 		67
B 124.4
(2.1)
P 		138
(3)
P 		45
(-3)
P 		85.6
(-0.4)
P 		133.8
(2.7)
P 		84.4
(-0.5)
P 		93
C 103.9
(2.2)
P 		114.4
(3)
P 		74.4
(-0.1)
P 		37.1
(-3)
P 		96.4
(1.6)
P 		72.1
(-0.3)
P 		77
avr 101.1
(2.1) 		110.4
(3) 		48.3
(-3) 		61.6
(-1.7) 		107.4
(2.7) 		74.3
(-0.5) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191109_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8115
Sequence Type Exemplar sequence
Representative Public ID Y39A3B.5 NCBI
Target Description Y39A3B.5 /REP_DB=WormBase Gene ID /WP=CE21646 /TR=Q9N515 /GB=AAF60516.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=7 transmembrane receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027672(9), NM_001027671(11), NM_001027673(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027672 NCBI Caenorhabditis elegans Y39A3B.5b (Y39A3B.5) mRNA, complete cds. 9/11 None
NM_001027671 NCBI Caenorhabditis elegans Y39A3B.5a (Y39A3B.5) mRNA, complete cds. 11/11 None
NM_001027673 NCBI Caenorhabditis elegans Y39A3B.5c (Y39A3B.5) mRNA, complete cds. 11/11 None
Y39A3B.5b ENSEMBL cdna:known chromosome:CEL140:III:2009315:2016007:-1 gene:Y39A3B.5 9/11 None
Y39A3B.5a ENSEMBL cdna:known chromosome:CEL140:III:2010988:2021577:-1 gene:Y39A3B.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2010987-2016007(-) 96.4 100.0
Public Domain and Genome References
Ensembl Y39A3B.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001022843 Y39A3B.5b [Caenorhabditis elegans] 0.0
blast NP_001022842 Y39A3B.5a [Caenorhabditis elegans] gb|AAF60516.1| Hypothetical protein Y39A3B.5a [Caenorhabditis elegans] 0.0
blast CAE69097 Hypothetical protein CBG15122 [Caenorhabditis briggsae] 0.0
blast NP_001022844 Y39A3B.5c [Caenorhabditis elegans] gb|AAX55685.1| Hypothetical protein Y39A3B.5c [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 1.0E-70
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 9.7E-76
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022843.1 7 20-42,55-77,92-114,135-157,197-219,411-433,453-472
NP_001022842.1 9 20-42,55-77,92-114,135-157,197-219,411-433,453-472,493-512,522-544
NP_001022844.1 9 20-42,55-77,92-114,135-157,183-205,300-322,342-361,382-401,411-433
Y39A3B.5b 7 20-42,55-77,92-114,135-157,197-219,411-433,453-472
Y39A3B.5a 9 20-42,55-77,92-114,135-157,197-219,411-433,453-472,493-512,522-544
Sequence
Target Sequence 
>C. ELEGANS:191109_AT
tgggcatcgcaaatccgacacatcaatttgcctcgaaaatcctagtttaaggtctacgca
cactcagaaaagtgcaatggcaaagcaaagagtgattaaaatgctcattgttgtcgtaat
tatctttttctgttgttggacgccttcctacatctggtggttgttattgatcgcgggaga
ctcgtttcaaagcctcaacttatctgtctggaacagcgatatcaacacattcatcactct
tcttacctatatttcttcatgcaccaatcccatcacatattgcttcctgaacaaaaaatt
taggaatgcggtgtatgcaacatttggcaggaagaaaaatatgcgacatcattttcagaa
ggtatattttgatatttttgaattattgatattttttaaaatcaattatcaaaaatcaat
aaaatctccggtttcagttttttctaactatctgtttttcggcttttcggcgccgctaat
ttctgttaaccttagtttgattttgttcaggtctacattccggtcaacggcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGGCATCGCAAATCCGACACATCA 200 555 1140 Antisense
GTTTAAGGTCTACGCACACTCAGAA 534 449 1184 Antisense
TATCTTTTTCTGTTGTTGGACGCCT 461 659 1260 Antisense
TGGTGGTTGTTATTGATCGCGGGAG 87 553 1294 Antisense
GGGAGACTCGTTTCAAAGCCTCAAC 343 493 1314 Antisense
AAGCCTCAACTTATCTGTCTGGAAC 317 149 1329 Antisense
TATCAACACATTCATCACTCTTCTT 149 661 1359 Antisense
ATATTTCTTCATGCACCAATCCCAT 194 19 1388 Antisense
TCCCATCACATATTGCTTCCTGAAC 251 599 1407 Antisense
TTTTCGGCGCCGCTAATTTCTGTTA 291 675 1603 Antisense
CAGGTCTACATTCCGGTCAACGGCG 35 205 1647 Antisense
Sequence Source Affymetrix Proprietary Database