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[191106_at] G-protein coupled receptor

Description T07D4.1 /REP_DB=WormBase Gene ID /WP=CE25106 /TR=Q22305 /GB=CAB76411.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster 6grp_total > 74      4grp_total > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 64.5
(-0.4)
M 		47.4
(-3)
A 		51.4
(-2.4)
A 		87.1
(3)
P 		40
B 63.2
(1.4)
A 		74.8
(3)
A 		30.5
(-3)
A 		38
(-2)
A 		44
C 46.5
(-2.9)
A 		62
(-1.9)
A 		44.1
(-3)
A 		141.6
(3)
P 		98
avr 58.1
(-0.9) 		61.4
(-0.5) 		42
(-3) 		88.9
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 22.9
(-3)
A 		25.6
(-1.9)
A 		36.1
(2.3)
A 		34.9
(1.8)
P 		37.9
(3)
A 		37.2
(2.7)
A 		15
B 9.5
(-2.3)
A 		5.6
(-3)
A 		37.3
(2.5)
A 		32.9
(1.7)
P 		31.2
(1.5)
A 		40.1
(3)
A 		35
C 41.3
(0.4)
M 		37.3
(-0.1)
A 		38.4
(0)
A 		62
(3)
A 		14.6
(-3)
A 		31.4
(-0.9)
A 		47
avr 24.6
(-2.5) 		22.8
(-3) 		37.3
(1.2) 		43.3
(3) 		27.9
(-1.5) 		36.2
(0.9) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 23.5
(3)
M 		10.3
(-3)
A 		13.4
(-1.6)
A 		12.7
(-1.9)
P 		13
B 20.1
(3)
A 		18.5
(2.3)
A 		7.1
(-3)
A 		8.1
(-2.5)
A 		13
C 15.4
(-3)
A 		17.8
(-1.3)
A 		15.4
(-3)
A 		23.9
(3)
P 		9
avr 19.7
(3) 		15.5
(-0.3) 		12
(-3) 		14.9
(-0.7) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 4.2
(-3)
A 		9.1
(1)
A 		7.9
(0)
A 		8.8
(0.8)
P 		11.5
(3)
A 		9
(0.9)
A 		7
B 3.3
(-2.4)
A 		1.9
(-3)
A 		9
(0.3)
A 		8.7
(0.1)
P 		12.7
(2)
A 		14.9
(3)
A 		13
C 15.3
(3)
M 		11.4
(0.8)
A 		9.8
(-0.1)
A 		12.5
(1.4)
A 		4.7
(-3)
A 		10.5
(0.3)
A 		11
avr 7.6
(-2.9) 		7.5
(-3) 		8.9
(-0.9) 		10
(0.8) 		9.6
(0.1) 		11.5
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191106_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2796
Sequence Type Exemplar sequence
Representative Public ID T07D4.1 NCBI
Target Description T07D4.1 /REP_DB=WormBase Gene ID /WP=CE25106 /TR=Q22305 /GB=CAB76411.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063487
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000030616 ENSEMBL cdna:SNAP chromosome:CEL140:II:8863625:8864546:-1 None
NM_063487 NCBI Caenorhabditis elegans T07D4.1 (T07D4.1) mRNA, complete cds. None
T07D4.1 ENSEMBL cdna:known chromosome:CEL140:II:8861223:8865096:-1 gene:T07D4.1 None
GENEFINDER00000030625 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8863746:8865084:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8861219-8865093(-) 98.03 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor
Ensembl T07D4.1
Entrez Gene 188226 Entrez gene
SwissProt Q22305 EMBL-EBI
WormBase CE36450 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90404 Hypothetical protein T07D4.1 [Caenorhabditis elegans] emb|CAB76411.2| Hypothetical protein T07D4.1 [Caenorhabditis elegans] ref|NP_495888.2| T07D4.1 [Caenorhabditis elegans] 0.0
blast CAA90404 Hypothetical protein T07D4.1 [Caenorhabditis elegans] emb|CAB76411.2| Hypothetical protein T07D4.1 [Caenorhabditis elegans] ref|NP_495888.2| T07D4.1 [Caenorhabditis elegans] 1.0E-160
blast CAE59753 Hypothetical protein CBG03199 [Caenorhabditis briggsae] 1.0E-136
blast CAE59753 Hypothetical protein CBG03199 [Caenorhabditis briggsae] 1.0E-106
blast CAA90404 Hypothetical protein T07D4.1 [Caenorhabditis elegans] emb|CAB76411.2| Hypothetical protein T07D4.1 [Caenorhabditis elegans] ref|NP_495888.2| T07D4.1 [Caenorhabditis elegans] 1.0E-105
blast CAE59753 Hypothetical protein CBG03199 [Caenorhabditis briggsae] 2.0E-68
blast AAB52881 Hypothetical protein T23C6.5 [Caenorhabditis elegans] ref|NP_510779.2| T23C6.5 [Caenorhabditis elegans] 3.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 9.5E-55
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 4.8E-28
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 9.2E-36
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495888.2 7 37-59,71-93,112-134,155-177,192-214,298-320,335-357
T07D4.1 7 37-59,71-93,112-134,155-177,192-214,298-320,335-357
SNAP00000030616 4 20-42,64-86,101-123,197-219
GENEFINDER00000030625 5 33-55,67-89,108-130,151-173,188-210
Sequence
Target Sequence 
>C. ELEGANS:191106_AT
tctattctcgaatcagtcatttactttggacatctgacagtaatcgacaaagcagcaggc
agagtcatggtattttattttattttaaattttttctatttggtggtttccgtggtaggc
agttttcagaatcaaatggatccctggaaagaggtaatggatatgcaaacaccgcacaac
ctggttcaagttggcaaatgaaaaatggaagaattgttgtttataaacaagaaagccttc
taaatgttccaaaacgagagaagaaagttaaagaaccaaagcgaccaaaagataccgaag
gacggcggaaactgtatataaaacttgaaaaagttaaggttgtacgacttcttgttgcag
ttgtcgtttcatttgctcttcttacttttccgcaccatgcaagacttttgtacacgagtt
tccaaactggtaccatctgcaattcaaattggacaatgatattccaaccactgtcctata
tattcttgttcatatcttcagcgattaacccaattcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTATTCTCGAATCAGTCATTTACT 377 615 653 Antisense
GCAGCAGGCAGAGTCATGGTATTTT 700 311 704 Antisense
GTTTCCGTGGTAGGCAGTTTTCAGA 174 451 758 Antisense
AACACCGCACAACCTGGTTCAAGTT 700 135 820 Antisense
GGTTGTACGACTTCTTGTTGCAGTT 599 505 990 Antisense
TTACTTTTCCGCACCATGCAAGACT 139 683 1034 Antisense
GCAAGACTTTTGTACACGAGTTTCC 209 319 1051 Antisense
GAGTTTCCAAACTGGTACCATCTGC 84 399 1068 Antisense
ACAATGATATTCCAACCACTGTCCT 701 113 1105 Antisense
ACCACTGTCCTATATATTCTTGTTC 585 85 1119 Antisense
ATCTTCAGCGATTAACCCAATTCTA 593 31 1146 Antisense
Sequence Source Affymetrix Proprietary Database