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[191103_at] 7TM chemoreceptor, sri family

Description T10D4.9 /REP_DB=WormBase Gene ID /WP=CE20049 /GEN=sri-42 /TR=Q9TZE9 /GB=AAC68720.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 43      4grp_total > 09      6grp_cgc > 91      6grp_cgc_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 4.4
(-3)
A 		3.9
(-3)
A 		3.5
(-3)
A 		120.4
(3)
A 		117
B 2.6
(-3)
A 		5.5
(3)
A 		2.7
(-2.8)
A 		4.6
(1.1)
A 		3
C 3.4
(-3)
A 		24
(-2)
A 		19.7
(-2.2)
A 		121.7
(3)
A 		118
avr 3.5
(-3) 		11.1
(-2.4) 		8.6
(-2.6) 		82.2
(3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 7.2
(-2.5)
A 		20.4
(-1.2)
A 		61.4
(3)
A 		20.7
(-1.1)
A 		3.1
(-2.9)
A 		2.5
(-3)
A 		59
B 3
(-2.3)
A 		4
(-0.1)
A 		4.5
(1)
A 		5.4
(3)
A 		2.7
(-3)
A 		3.4
(-1.4)
A 		3
C 23.1
(3)
A 		5.2
(-2.3)
A 		18.6
(1.7)
A 		3.4
(-2.8)
A 		2.8
(-3)
A 		9.6
(-1)
A 		20
avr 11.1
(-1.1) 		9.9
(-1.3) 		28.2
(3) 		9.8
(-1.4) 		2.9
(-3) 		5.2
(-2.5) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 1.6
(-2.7)
A 		0.9
(-3)
A 		0.9
(-3)
A 		17.6
(3)
A 		17
B 0.8
(-1.5)
A 		1.4
(3)
A 		0.6
(-3)
A 		1
(0)
A 		1
C 1.1
(-3)
A 		6.9
(-1.2)
A 		6.9
(-1.2)
A 		20.5
(3)
A 		19
avr 1.2
(-3) 		3.1
(-2) 		2.8
(-2.2) 		13
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.3
(-2.7)
A 		7.3
(0.1)
A 		13.4
(3)
A 		5.3
(-0.8)
A 		0.9
(-2.9)
A 		0.6
(-3)
A 		13
B 1.1
(-3)
A 		1.3
(1)
A 		1.1
(-3)
A 		1.4
(3)
A 		1.1
(-3)
A 		1.3
(1)
A 		0
C 8.6
(3)
A 		1.6
(-2.3)
A 		4.7
(0)
A 		0.7
(-3)
A 		0.9
(-2.8)
A 		3.2
(-1.1)
A 		8
avr 3.7
(-0) 		3.4
(-0.3) 		6.4
(3) 		2.5
(-1.3) 		1
(-3) 		1.7
(-2.2) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191103_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4572
Sequence Type Exemplar sequence
Representative Public ID T10D4.9 NCBI
Target Description T10D4.9 /REP_DB=WormBase Gene ID /WP=CE20049 /GEN=sri-42 /TR=Q9TZE9 /GB=AAC68720.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062056(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062056 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-42) (sri-42) mRNA, complete cds. 11/11 None
SNAP00000032459 ENSEMBL cdna:SNAP chromosome:CEL140:II:3140913:3141445:-1 9/11 None
GENEFINDER00000032472 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3135576:3142950:-1 11/11 None
T10D4.9 ENSEMBL cdna:known chromosome:CEL140:II:3140913:3142950:-1 gene:T10D4.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3140911-3142949(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-42
Ensembl T10D4.9
Entrez Gene 191915 Entrez gene
SwissProt Q9TZE9 EMBL-EBI
WormBase CE20049 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC68720 Serpentine receptor, class i protein 42 [Caenorhabditis elegans] ref|NP_494457.1| Serpentine Receptor, class I family member (sri-42) [Caenorhabditis elegans] 1.0E-174
blast AAC68720 Serpentine receptor, class i protein 42 [Caenorhabditis elegans] ref|NP_494457.1| Serpentine Receptor, class I family member (sri-42) [Caenorhabditis elegans] 1.0E-172
blast AAC68719 Serpentine receptor, class i protein 54 [Caenorhabditis elegans] ref|NP_494456.2| Serpentine Receptor, class I family member (sri-54) [Caenorhabditis elegans] 1.0E-145
blast AAC68712 Serpentine receptor, class i protein 43 [Caenorhabditis elegans] ref|NP_494458.1| Serpentine Receptor, class I family member (sri-43) [Caenorhabditis elegans] 1.0E-135
blast AAC68712 Serpentine receptor, class i protein 43 [Caenorhabditis elegans] ref|NP_494458.1| Serpentine Receptor, class I family member (sri-43) [Caenorhabditis elegans] 1.0E-134
blast AAC68720 Serpentine receptor, class i protein 42 [Caenorhabditis elegans] ref|NP_494457.1| Serpentine Receptor, class I family member (sri-42) [Caenorhabditis elegans] 3.0E-76
blast AAB66154 Serpentine receptor, class i protein 45 [Caenorhabditis elegans] ref|NP_493782.2| Serpentine Receptor, class I family member (sri-45) [Caenorhabditis elegans] 3.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.8E-80
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 6.3E-31
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.1E-48
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494457.1 6 10-32,44-66,86-108,129-151,186-208,236-258
T10D4.9 6 10-32,44-66,86-108,129-151,186-208,236-258
SNAP00000032459 2 21-43,76-98
GENEFINDER00000032472 13 10-32,44-66,86-108,129-151,186-208,235-257,267-289,332-354,358-380,401-423,462-484,516-538,542-564
Sequence
Target Sequence 
>C. ELEGANS:191103_AT
tatagcttttgtgctagcttgcccagttgcagcgtgcatttgttattttcatgcaggagt
cgaacgggagaaggttgaggaatttattgatcagatgtaccccgactacaaaaccgaact
cttatctcttcaaaactacgtgatctaccgagactacaacgtctatatgacattttttgt
tatcttcaaaatggtcgccacgttcttggttttttcgatgatcgcacttgcaaccttaga
tatgaagaagatgctgaacgaagttcgtcgaagtatatcaaatcagaactacaatcgcca
caagacggccatcaacagtctcttagcacagttcgccgccgttttggtactcctgctacc
cggattagcgttgtacccaataagactgtacccctatgaaactggaatgtggatcgttaa
catcacctggtgcatttttcaaagccgctcatccatcaattcgttggttctacttgcaac
tacccctccctaccggaattttctgctgcggaatgtgctgaaaagtcggactaaaccgtc
gactgtcgttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATAGCTTTTGTGCTAGCTTGCCCA 93 661 408 Antisense
TGCCCAGTTGCAGCGTGCATTTGTT 245 585 427 Antisense
CAAAATGGTCGCCACGTTCTTGGTT 209 191 594 Antisense
GATGATCGCACTTGCAACCTTAGAT 404 411 624 Antisense
CAATCGCCACAAGACGGCCATCAAC 392 181 699 Antisense
CAACAGTCTCTTAGCACAGTTCGCC 571 189 720 Antisense
GCTACCCGGATTAGCGTTGTACCCA 311 301 762 Antisense
TACCCAATAAGACTGTACCCCTATG 622 649 781 Antisense
CGCTCATCCATCAATTCGTTGGTTC 375 255 853 Antisense
TCCCTACCGGAATTTTCTGCTGCGG 139 599 894 Antisense
GGACTAAACCGTCGACTGTCGTTGT 426 523 935 Antisense
Sequence Source Affymetrix Proprietary Database