[Home] | [Total List]

[191100_at] 7TM chemoreceptor, srh family

Description R05D8.3 /REP_DB=WormBase Gene ID /WP=CE23895 /GEN=srh-56 /TR=Q9N5G0 /GB=AAF39947.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 80      4grp_total > 04      6grp_cgc > 95      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 7.1
(-2.9)
A 		18
(-2.1)
A 		5.8
(-3)
A 		86.8
(3)
A 		81
B 7.2
(-2.7)
A 		5.6
(-3)
A 		13.9
(-1.2)
A 		33.6
(3)
A 		28
C 60.7
(0.4)
A 		9.1
(-2.9)
A 		6.9
(-3)
A 		102.3
(3)
P 		95
avr 25
(-1.5) 		10.9
(-2.8) 		8.9
(-3) 		74.2
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 23.6
(3)
A 		5.7
(-2.1)
A 		9.1
(-1.1)
A 		2.6
(-3)
A 		22.1
(2.6)
A 		6.4
(-1.9)
A 		21
B 13
(-1.3)
A 		15.1
(-0.9)
A 		21
(0.2)
A 		36.4
(3)
A 		6.5
(-2.4)
A 		3.4
(-3)
A 		33
C 5.1
(-2.6)
A 		40.6
(3)
A 		2.6
(-3)
A 		34.3
(2)
A 		5.6
(-2.5)
A 		20.5
(-0.2)
A 		38
avr 13.9
(-1.4) 		20.5
(1.4) 		10.9
(-2.7) 		24.4
(3) 		11.4
(-2.5) 		10.1
(-3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 2.6
(-2.4)
A 		3.9
(-1.7)
A 		1.5
(-3)
A 		12.7
(3)
A 		11
B 2.3
(-2.1)
A 		1.4
(-3)
A 		3.2
(-1.1)
A 		7.2
(3)
A 		6
C 20.1
(3)
A 		2.6
(-2.9)
A 		2.4
(-3)
A 		17.3
(2.1)
P 		18
avr 8.3
(0.5) 		2.6
(-2.9) 		2.4
(-3) 		12.4
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 4.4
(0.7)
A 		2
(-1.7)
A 		2
(-1.7)
A 		0.7
(-3)
A 		6.7
(3)
A 		1.6
(-2.1)
A 		6
B 4.5
(-0.7)
A 		5
(-0.3)
A 		5.1
(-0.3)
A 		9.6
(3)
A 		2.6
(-2.1)
A 		1.3
(-3)
A 		8
C 1.9
(-2.4)
A 		12.4
(3)
A 		0.7
(-3)
A 		6.9
(0.2)
A 		1.8
(-2.4)
A 		6.9
(0.2)
A 		12
avr 3.6
(-1.5) 		6.5
(3) 		2.6
(-3) 		5.7
(1.8) 		3.7
(-1.3) 		3.3
(-1.9) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191100_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15885
Sequence Type Exemplar sequence
Representative Public ID R05D8.3 NCBI
Target Description R05D8.3 /REP_DB=WormBase Gene ID /WP=CE23895 /GEN=srh-56 /TR=Q9N5G0 /GB=AAF39947.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071354(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071354 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-56) (srh-56) mRNA, complete cds. 11/11 None
SNAP00000009124 ENSEMBL cdna:SNAP chromosome:CEL140:V:2771687:2777105:1 11/11 None
GENEFINDER00000009143 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2771687:2779509:1 11/11 None
R05D8.3 ENSEMBL cdna:known chromosome:CEL140:V:2771687:2773346:1 gene:R05D8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2771686-2773346(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-56
Ensembl R05D8.3
Entrez Gene 191863 Entrez gene
SwissProt Q9N5G0 EMBL-EBI
WormBase CE23895 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503756 Serpentine Receptor, class J family member (srj-18) [Caenorhabditis elegans] gb|AAF39946.1| Serpentine receptor, class j protein 18 [Caenorhabditis elegans] 1.0E-166
blast NP_503755 Serpentine Receptor, class H family member (srh-56) [Caenorhabditis elegans] gb|AAF39947.1| Serpentine receptor, class h protein 56 [Caenorhabditis elegans] 1.0E-163
blast NP_503755 Serpentine Receptor, class H family member (srh-56) [Caenorhabditis elegans] gb|AAF39947.1| Serpentine receptor, class h protein 56 [Caenorhabditis elegans] 1.0E-162
blast NP_503755 Serpentine Receptor, class H family member (srh-56) [Caenorhabditis elegans] gb|AAF39947.1| Serpentine receptor, class h protein 56 [Caenorhabditis elegans] 1.0E-161
blast NP_503756 Serpentine Receptor, class J family member (srj-18) [Caenorhabditis elegans] gb|AAF39946.1| Serpentine receptor, class j protein 18 [Caenorhabditis elegans] 1.0E-105
blast AAF60723 Serpentine receptor, class h protein 305 [Caenorhabditis elegans] gb|AAF60725.1| Serpentine receptor, class h protein 57 [Caenorhabditis elegans] ref|NP_494591.1| Serpentine Receptor, class H family member (srh-305) [Caenorhabditis elegans] ref|NP_494590.1| Serpentine Receptor, class H family member (srh-57) [Caenorhabditis elegans] 6.0E-97
blast AAF60723 Serpentine receptor, class h protein 305 [Caenorhabditis elegans] gb|AAF60725.1| Serpentine receptor, class h protein 57 [Caenorhabditis elegans] ref|NP_494591.1| Serpentine Receptor, class H family member (srh-305) [Caenorhabditis elegans] ref|NP_494590.1| Serpentine Receptor, class H family member (srh-57) [Caenorhabditis elegans] 1.0E-96
blast AAF60723 Serpentine receptor, class h protein 305 [Caenorhabditis elegans] gb|AAF60725.1| Serpentine receptor, class h protein 57 [Caenorhabditis elegans] ref|NP_494591.1| Serpentine Receptor, class H family member (srh-305) [Caenorhabditis elegans] ref|NP_494590.1| Serpentine Receptor, class H family member (srh-57) [Caenorhabditis elegans] 2.0E-96
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.2E-12
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.2E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503755.1 7 26-48,61-83,108-125,146-165,202-224,252-274,289-307
R05D8.3 7 26-48,61-83,108-125,146-165,202-224,252-274,289-307
SNAP00000009124 10 26-48,61-83,108-125,146-165,202-224,252-274,349-371,384-406,455-477,502-524
GENEFINDER00000009143 17 26-48,61-83,108-125,146-165,202-224,252-274,289-307,363-385,411-433,446-468,517-539,564-586,601-623,668-690,705-727,748-770,813-835
Sequence
Target Sequence 
>C. ELEGANS:191100_AT
gcttccattttatctagacgacactgaccaattgaaaatgagacagaaggtcttggagag
aatcccctgtccgacgagcgaattctgggacccaaaaacctatgtactgctgcagggcgg
agaggtcttgccattctggtcaatcacaattggttttggatttgttattttccaaacttt
tttctttttgttacacaccgtttatcacctcacactagtatcaagtgccaaaatatcggc
ggcgacgaagaatcttcagcgaaagtttctgaagaatgtttctattcagatctcaattcc
atggattgccattgcatttcctgtggcctacactatgtatgcagacaaaatgaattacta
taatcaagcctacaacaacaacgctatgctaattatggcaaatcacggacttctatgcac
ctgttgcaccctttttatttacaaaccatacagagatttcactaaaagtctgatccctgg
acaacgattttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTCCATTTTATCTAGACGACACT 484 305 492 Antisense
TCCGACGAGCGAATTCTGGGACCCA 505 595 561 Antisense
GGGACCCAAAAACCTATGTACTGCT 694 493 578 Antisense
GTACTGCTGCAGGGCGGAGAGGTCT 90 459 595 Antisense
AGAGGTCTTGCCATTCTGGTCAATC 190 69 612 Antisense
TTGTTACACACCGTTTATCACCTCA 46 701 679 Antisense
GTTTATCACCTCACACTAGTATCAA 646 449 691 Antisense
ATGGATTGCCATTGCATTTCCTGTG 514 51 792 Antisense
ATTTCCTGTGGCCTACACTATGTAT 256 17 807 Antisense
AAATCACGGACTTCTATGCACCTGT 190 117 891 Antisense
GTCTGATCCCTGGACAACGATTTTC 278 471 959 Antisense
Sequence Source Affymetrix Proprietary Database