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[191099_at]

Description F35G12.1 /REP_DB=WormBase Gene ID /WP=CE00967 /TR=Q20048 /GB=CAA86324.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=malonyl-COA decarboxylase
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 85      4grp_highest_8_8 > 63      4grp_high_8_8 > 19      6grp_highest_nonorm > 97      6grp_total > 65      4grp_total > 29      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 223
1 2 3 4 range
A 403.6
(0.6)
P 		455.9
(3)
P 		325.3
(-3)
P 		454.1
(2.9)
P 		131
B 487.6
(3)
P 		459.4
(1.8)
P 		348.8
(-3)
P 		465.6
(2)
P 		139
C 548.7
(3)
P 		439.6
(-1.4)
P 		398.9
(-3)
P 		529.3
(2.2)
P 		150
avr 480
(2.9) 		451.6
(1.5) 		357.7
(-3) 		483
(3) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 749
1 2 3 4 5 6 range
A 703
(-3)
P 		915.5
(-0.1)
P 		1139.2
(3)
P 		935.9
(0.2)
P 		941.8
(0.3)
P 		1100.8
(2.5)
P 		436
B 709.6
(-3)
P 		815.4
(-1.9)
P 		1300.5
(2.9)
P 		868.2
(-1.4)
P 		1000.8
(-0.1)
P 		1314
(3)
P 		604
C 671.7
(-3)
P 		857
(-1.5)
P 		980.1
(-0.5)
P 		958.1
(-0.7)
P 		881.3
(-1.3)
P 		1420.5
(3)
P 		749
avr 694.8
(-3) 		862.6
(-1.3) 		1139.9
(1.6) 		920.7
(-0.7) 		941.3
(-0.5) 		1278.4
(3) 		584
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 147
(3)
P 		99
(-0.6)
P 		85
(-1.6)
P 		66.5
(-3)
P 		81
B 155.5
(3)
P 		113.5
(-0.4)
P 		80.8
(-3)
P 		99.2
(-1.5)
P 		75
C 181.6
(3)
P 		126.4
(-0.6)
P 		139
(0.2)
P 		89.3
(-3)
P 		92
avr 161.4
(3) 		113
(-0.8) 		101.6
(-1.7) 		85
(-3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 360
1 2 3 4 5 6 range
A 129.6
(-3)
P 		325.6
(3)
P 		248.1
(0.6)
P 		237.4
(0.3)
P 		284.2
(1.7)
P 		268
(1.2)
P 		196
B 246.9
(-2.6)
P 		271.4
(-2)
P 		315.8
(-1)
P 		230
(-3)
P 		406.6
(1.1)
P 		490
(3)
P 		260
C 249
(-1.8)
P 		261.5
(-1.5)
P 		249.4
(-1.8)
P 		192.7
(-3)
P 		285.2
(-1)
P 		475.5
(3)
P 		283
avr 208.5
(-3) 		286.2
(-0.7) 		271.1
(-1.1) 		220
(-2.7) 		325.3
(0.5) 		411.2
(3) 		203
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191099_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6846
Sequence Type Exemplar sequence
Representative Public ID F35G12.1 NCBI
Target Description F35G12.1 /REP_DB=WormBase Gene ID /WP=CE00967 /TR=Q20048 /GB=CAA86324.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=malonyl-COA decarboxylase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027390(11), NR_002369(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027390 NCBI Caenorhabditis elegans F35G12.1a (F35G12.1) mRNA, complete cds. 11/11 None
NR_002369 NCBI Caenorhabditis elegans F35G12.1, miscRNA. 11/11 None
SNAP00000042235 ENSEMBL cdna:SNAP chromosome:CEL140:III:4566375:4568082:-1 11/11 None
GENEFINDER00000042262 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4566375:4568082:-1 11/11 None
F35G12.1a ENSEMBL cdna:known chromosome:CEL140:III:4566248:4568382:-1 gene:F35G12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4566374-4567739(-) 100.0 100.0
Public Domain and Genome References
Ensembl F35G12.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA86324 Hypothetical protein F35G12.1a [Caenorhabditis elegans] ref|NP_001022561.1| F35G12.1a [Caenorhabditis elegans] 0.0
blast CAE71184 Hypothetical protein CBG18041 [Caenorhabditis briggsae] 0.0
blast CAF98885 unnamed protein product [Tetraodon nigroviridis] 2.0E-76
Protein Domains
Database ID Description E-Value
Pfam IPR007956 EMBL-EBI Malonyl-CoA decarboxylase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:191099_AT
tattcaatcacttctacacagcctggtctttctggtattgatctcggaaatatgctcatc
aagaaagtcgccactaaacttcaaaaagatgttccatcagtcacaactcattcaacatta
tctccgattcctggtttccgaccttggcttatcagaaatctgaaagggaattcagaatat
ccttcaattatgaatgaaaaggttgtcaattggatttctgatatatctgaaagggaaatg
aacgaagtagaagcaaccgaaactctactgaaagtcataagcaatgaaaaaacgaaaaag
gagcagctcaatgcaatccagcacattttgatgtacgcgtgtgctcattatctttgtaat
gcaaaacgaaatggaatggctttaaattcagttgcaaacttccacattagaaacggcgca
g

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTCAATCACTTCTACACAGCCTG 628 663 505 Antisense
GCCTGGTCTTTCTGGTATTGATCTC 595 281 525 Antisense
ATGCTCATCAAGAAAGTCGCCACTA 345 41 556 Antisense
AGATGTTCCATCAGTCACAACTCAT 512 67 591 Antisense
CACAACTCATTCAACATTATCTCCG 199 195 606 Antisense
CAACATTATCTCCGATTCCTGGTTT 487 189 617 Antisense
GTTTCCGACCTTGGCTTATCAGAAA 430 449 638 Antisense
GAAGCAACCGAAACTCTACTGAAAG 451 339 754 Antisense
GAGCAGCTCAATGCAATCCAGCACA 47 391 805 Antisense
GATGTACGCGTGTGCTCATTATCTT 655 409 834 Antisense
AACTTCCACATTAGAAACGGCGCAG 322 139 901 Antisense
Sequence Source Affymetrix Proprietary Database