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[191098_at] Transthyretin-like family

Description Y51A2D.9 /REP_DB=WormBase Gene ID /WP=CE19205 /TR=Q9XXR4 /GB=CAA16399.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Transthyretin-like family
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 62      4grp_highest_8_8 > 31      4grp_high_8_8 > 13      6grp_highest_nonorm > 55      6grp_total > 62      4grp_total > 11      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1622
1 2 3 4 range
A 1022
(-2.1)
P 		1040.8
(-2)
P 		811.5
(-3)
P 		2226.4
(3)
P 		1415
B 1053.8
(-2.2)
P 		1011.3
(-2.4)
P 		902.3
(-3)
P 		2021.9
(3)
P 		1120
C 1062.2
(-2)
P 		906.2
(-2.6)
P 		798.7
(-3)
P 		2420.3
(3)
P 		1622
avr 1046
(-2.1) 		986.1
(-2.4) 		837.5
(-3) 		2222.9
(3) 		1385

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1835
1 2 3 4 5 6 range
A 1181.9
(-1.7)
P 		1043
(-2.1)
P 		2612.4
(3)
P 		1707
(0)
P 		1257.7
(-1.4)
P 		777.3
(-3)
P 		1835
B 1168.1
(-3)
P 		1349.4
(-1.8)
P 		2100.3
(3)
P 		1840.2
(1.3)
P 		1621.6
(-0.1)
P 		1173
(-3)
P 		932
C 1289
(-3)
P 		1574.1
(-1.2)
P 		1412.5
(-2.2)
P 		2251.4
(3)
P 		1319.4
(-2.8)
P 		1307.4
(-2.9)
P 		962
avr 1213
(-2.2) 		1322.2
(-1.5) 		2041.7
(3) 		1932.9
(2.3) 		1399.6
(-1) 		1085.9
(-3) 		956
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 222
1 2 3 4 range
A 372.1
(3)
P 		225.9
(-2.5)
P 		212.2
(-3)
P 		325.9
(1.3)
P 		160
B 336
(0.4)
P 		249.8
(-1.9)
P 		209.1
(-3)
P 		430.9
(3)
P 		222
C 351.6
(0.7)
P 		260.5
(-3)
P 		278.4
(-2.3)
P 		408.1
(3)
P 		148
avr 353.2
(1.6) 		245.4
(-2.5) 		233.2
(-3) 		388.3
(3) 		155

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 470
1 2 3 4 5 6 range
A 217.9
(-2.5)
P 		370.9
(-0.1)
P 		568.9
(3)
P 		432.9
(0.9)
P 		379.5
(0)
P 		189.2
(-3)
P 		380
B 406.4
(-3)
P 		449.2
(-2)
P 		510
(-0.5)
P 		487.4
(-1.1)
P 		658.8
(3)
P 		437.4
(-2.3)
P 		252
C 477.8
(2.9)
P 		480.3
(3)
P 		359.5
(-3)
P 		452.8
(1.6)
P 		426.9
(0.3)
P 		437.7
(0.9)
P 		121
avr 367.4
(-2.4) 		433.5
(0.5) 		479.5
(2.6) 		457.7
(1.6) 		488.4
(3) 		354.8
(-3) 		134
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191098_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12674
Sequence Type Exemplar sequence
Representative Public ID Y51A2D.9 NCBI
Target Description Y51A2D.9 /REP_DB=WormBase Gene ID /WP=CE19205 /TR=Q9XXR4 /GB=CAA16399.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Transthyretin-like family
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075227(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075227 NCBI Caenorhabditis elegans Y51A2D.9 (Y51A2D.9) mRNA, complete cds. 11/11 A 
GENEFINDER00000034277 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18558036:18559128:-1 11/11 None
Y51A2D.9.1 ENSEMBL cdna:known chromosome:CEL140:V:18557937:18559182:-1 gene:Y51A2D.9 11/11 A 
Y51A2D.9.2 ENSEMBL cdna:known chromosome:CEL140:V:18558036:18559539:-1 gene:Y51A2D.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18558035-18559128(-) 100.0 100.0
Public Domain and Genome References
Gene Title Transthyretin-like family
Ensembl Y51A2D.9
Entrez Gene 180209 Entrez gene
SwissProt Q9XXR4 EMBL-EBI
WormBase CE19205 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16399 Hypothetical protein Y51A2D.9 [Caenorhabditis elegans] ref|NP_507628.1| Y51A2D.9 [Caenorhabditis elegans] 7.0E-77
blast CAE67417 Hypothetical protein CBG12905 [Caenorhabditis briggsae] 1.0E-67
blast CAA16408 Hypothetical protein Y51A2D.10 [Caenorhabditis elegans] ref|NP_507629.1| Y51A2D.10 [Caenorhabditis elegans] 1.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR001534 EMBL-EBI Transthyretin-like 2.9E-54
Sequence
Target Sequence 
>C. ELEGANS:191098_AT
gaaattctgctcatttccactgtttttctgctcactgatgccttgggaggtattgttggg
agtaaacagacggtcactgtggtcggcaaactggtctgtaacggagcaccggctagagac
gtccgtgtgaagcttttcgaggatggaactatctacgacacgaaaatggactcggtgaaa
acaattgctgatggaacattcaaggtctcgggatcccagaataaaatccgcaagattgac
ccgaaaatcaatatttatcataaatgcaactattctggactctgcccaaaaaaagtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATTCTGCTCATTTCCACTGTTT 8 365 22 Antisense
TTTCTGCTCACTGATGCCTTGGGAG 562 669 46 Antisense
TGCCTTGGGAGGTATTGTTGGGAGT 157 583 60 Antisense
GTTGGGAGTAAACAGACGGTCACTG 446 295 76 Antisense
AACAGACGGTCACTGTGGTCGGCAA 710 133 86 Antisense
TGTGGTCGGCAAACTGGTCTGTAAC 187 555 99 Antisense
AACTGGTCTGTAACGGAGCACCGGC 490 141 110 Antisense
ACGGAGCACCGGCTAGAGACGTCCG 613 93 122 Antisense
CACCGGCTAGAGACGTCCGTGTGAA 584 199 128 Antisense
ATCATAAATGCAACTATTCTGGACT 497 29 278 Antisense
TTCTGGACTCTGCCCAAAAAAAGTG 482 591 294 Antisense
Sequence Source Affymetrix Proprietary Database